PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_077990_tktk.t1 | ||||||||
Common Name | SOVF_077990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 579aa MW: 65639.1 Da PI: 5.9055 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv +yL++k++g+k++l evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+ Sp_077990_tktk.t1 6 LPPGFRFHPTDEELVAYYLNRKINGRKIDL-EVIAEVDLYKCEPWDLPsKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96 79****************************.99***************5334455777********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v s + ++vg+kktLv+y+grap+g++tdWvmheyrl Sp_077990_tktk.t1 97 KVNS-QMRAVGMKKTLVYYRGRAPHGHRTDWVMHEYRL 133 ****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-63 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.169 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MAPASLPPGF RFHPTDEELV AYYLNRKING RKIDLEVIAE VDLYKCEPWD LPSKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH 120 GHRTDWVMHE YRLDERECEV VSGLQDAYAL CRIFKKTAPP SPPKIAPQYG YNTNMTSDQQ 180 SSSIDIYTDG RCDDFESSTA YSVPIERSCS TNNFARGHAS SSSSHRNMGD GQWLHYLNDQ 240 NDFSFPTPAF QNSASLPYPP SKVDIAIECA RMQHRFTLPP LEVEGSPNFG ATNLSNMGIR 300 QSYYNNNGNT NTGGDILDEI LSVAQAQHDL INHPNNTTTT PDMMQSYNNN NYGNIMNQQP 360 SSMRPIMENS WEDMNTRLVG IGGVDELTKT ERMVDFSDLV VFDERNSDKD LRGEYGIVPI 420 ENTSTLFHGE LDIQDDPNKS FINDNDLDNF SSTPSFEVFE EVEVNQSLYV SSQWLAETRF 480 HHVQPTKTVQ VYLQRAIGLK NTSNDDSFQV DSKSSFFEKV AGFARNNLNG SAKSTPRMIT 540 KTTAYCYANK VEGIMSSWLV NRVWPSLTVI LALCMYHLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 5 | 158 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 5 | 158 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 5 | 158 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 5 | 158 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-56 | 5 | 158 | 19 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-56 | 5 | 158 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 5 | 158 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021857688.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A0K9RFA6 | 0.0 | A0A0K9RFA6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694967.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-111 | NAC domain containing protein 28 |