PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_076970_gxzp.t1

Common Name

SOVF_076970

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 485aa MW: 52471.9 Da PI: 4.443

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_076970_gxzp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Sp_076970_gxzp.t1 53 FSCTYCNRKFYSSQALGGHQNAH 75 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-5	51	80	No hit	No description
PROSITE profile	PS50157	11.344	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDFELNTSLT TTSSNDLPHL INLDLVLDRS SSSSSSMSAS SPSSPAAGEA RVFSCTYCNR 60 KFYSSQALGG HQNAHKLERT LAKKSKELNN NNKPLNLGSS RMAMAPHLRA YAHFEFREQG 120 VENRNVRVDL LLLGLEAELE EGEGSDEQEP GVGNDNDGHG GSSDDNDDNN DGGGGDLQIN 180 IYQNGNINHP NEPGQNVIGD GMNNVHFGDV PNGPIEGEFD HVMSDTSEED SNDSSSATYV 240 SAADISTDNE DVFADDYDPQ TPKNYHYPVR YDSHRQTIPN TSSLRTSNLL SLVPIQQHVN 300 PGFRMTAPSL HSDSSDSSIS EDNQGGSVLG NTTDNHMNFE VGEASNAVHF VPVSAQTPFQ 360 GSVDTNMYSS GGVAEGRPQI LHDNVFSSIP IAPFCLFGSD IEGSQYTNKK QQDFRDIDAI 420 SGGNFGNSDR AIKYIPSRGF SEIFMKRPTH VQSPRRLKIP TTSFPADMLN GLSLSASDPA 480 TPVVT

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDFELNTSLT TTSSNDLPHL INLDLVLDRS SSSSSSMSAS SPSSPAAGEA RVFSCTYCNR  60
KFYSSQALGG HQNAHKLERT LAKKSKELNN NNKPLNLGSS RMAMAPHLRA YAHFEFREQG  120
VENRNVRVDL LLLGLEAELE EGEGSDEQEP GVGNDNDGHG GSSDDNDDNN DGGGGDLQIN  180
IYQNGNINHP NEPGQNVIGD GMNNVHFGDV PNGPIEGEFD HVMSDTSEED SNDSSSATYV  240
SAADISTDNE DVFADDYDPQ TPKNYHYPVR YDSHRQTIPN TSSLRTSNLL SLVPIQQHVN  300
PGFRMTAPSL HSDSSDSSIS EDNQGGSVLG NTTDNHMNFE VGEASNAVHF VPVSAQTPFQ  360
GSVDTNMYSS GGVAEGRPQI LHDNVFSSIP IAPFCLFGSD IEGSQYTNKK QQDFRDIDAI  420
SGGNFGNSDR AIKYIPSRGF SEIFMKRPTH VQSPRRLKIP TTSFPADMLN GLSLSASDPA  480
TPVVT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9RFM0	0.0	A0A0K9RFM0_SPIOL; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-13	zinc finger protein 2