PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_071590_rodk.t1 | ||||||||
Common Name | SOVF_071590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 360aa MW: 39641.4 Da PI: 6.1912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 5.9e-09 | 151 | 197 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L ++P + kK +K ++L +A++++k+Lq Sp_071590_rodk.t1 151 DHILAERKRRELLSQLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKQLQ 197 6899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-13 | 138 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.522 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 151 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-7 | 151 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.06E-9 | 152 | 201 | No hit | No description |
SMART | SM00353 | 9.5E-10 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.157 | 277 | 353 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MASTMTMEAW LAQLEMDQIP SFIDNNSYEQ YHQSETIEGS FDEQLAATLG EDFPYSLYAT 60 SDDSASPHGD FDCNLIEQYI STPLISNSSD NNNDNNINND GDNVVSSNVQ KSQPSKKKGA 120 AKKGAAKKEV AKKEAVSGGT KRKRQPSQVQ DHILAERKRR ELLSQLFISL SAIVPGLKKI 180 DKTSVLGEAI KHMKQLQEKV KVLEQVAAKR TVESVVVVKK SKVVVDNGSC DNGNVSSSTV 240 DDYCTSASSG RSGNGGGDDN VSSFPEIEVK ISGNTMLLRV YCEQQKGILA KLFAEVDKHD 300 LRITNSSVIP FENLALDITI VAQMERGFNK KVKDFVRVLR NALRLANYQR HESSEDEHSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 159 | RKRQPSQVQDHILAERKRR |
2 | 155 | 160 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865815.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0K9RHN8 | 0.0 | A0A0K9RHN8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683069.1 | 1e-136 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-43 | bHLH family protein |