PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_071500_shoz.t1

Common Name

SOVF_071500

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 316aa MW: 34097.2 Da PI: 7.4714

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_071500_shoz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.2	3.3e-39	45	130	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnss 86 a+k+++++++hTkv+gR RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai ++tg+++++as+ + s s++s+++ Sp_071500_shoz.t1 45 APKRTSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAIVAATGSGTIPASFLaasS--SGASAVSQQG 130 789******************************************************************8885332..3333333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	49	300	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDDNRNPEEN QQQPQQLVTI SPSAATTTSS KDDLQQKQQL QQQLAPKRTS NKDRHTKVDG 60 RSRRIRMPAL CAARVFQLTR ELGHKTDGET IQWLLQQAEP AIVAATGSGT IPASFLAASS 120 SGASAVSQQG ASVSLGLHSK LNDLRAGVEV GNRANWANFG DNLGRSQVGT SIWPSIGGGY 180 AQVFDTGSNL VSQNSGYVTN FQLQGVGLPT TNMGLLSFTP ILARGTQIPG LQLGLSQDGH 240 GGVIGQLYQQ QQQQQQQQLQ HQQQQHQDHE QNNTGSGSGS GSAAATAEPV HQHQQQQQQQ 300 HHLQLQSHSN DNSREQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865938.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	2e-57	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A0K9RFH8	0.0	A0A0K9RFH8_SPIOL; Uncharacterized protein
STRING	XP_006484165.1	2e-79	(Citrus sinensis)
STRING	XP_006437974.1	2e-79	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-50	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]