PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_070070_xooc.t1
Common NameSOVF_070070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 412aa    MW: 44244.2 Da    PI: 4.4195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_070070_xooc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.8e-49111382129
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        ppGfrFhPtdeel ++yLk+kv gk+l   ++i+evd+y++ PwdLp  +++k+++ +wyfF++r+kky++g r+nrat+ gyWk+tg+d++
  Sp_070070_xooc.t1  11 PPGFRFHPTDEELFMFYLKRKVMGKSLGP-QMIAEVDVYRFAPWDLPsmACLKTRDLNWYFFCPRAKKYPNGGRANRATEWGYWKSTGNDRT 101
                        9*************************988.88***************6447888888*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        v+  +++ vg  ktLvf++g+apkge+tdWvmhe+rle
  Sp_070070_xooc.t1 102 VMY-SSRPVGKIKTLVFHRGKAPKGERTDWVMHEFRLE 138
                        ***.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-597160IPR003441NAC domain
PROSITE profilePS5100555.04810160IPR003441NAC domain
PfamPF023651.1E-2411137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MKGLLGRKSF PPGFRFHPTD EELFMFYLKR KVMGKSLGPQ MIAEVDVYRF APWDLPSMAC  60
LKTRDLNWYF FCPRAKKYPN GGRANRATEW GYWKSTGNDR TVMYSSRPVG KIKTLVFHRG  120
KAPKGERTDW VMHEFRLEDK LLTEKGVPQE SYVICKVFEK SGLGPKNGES YGARFVEEEW  180
DSDDDDNAQE TDYGLVVHDT GCGRGGDSPD VSVLTSSLGA PNVTSSVHTP IPLAVCAAAN  240
AASPNSAATN AASPNSAATN AASPTSTVTN LVSATSAAAF MGDPFTTAAS MGTHYVTDLS  300
MDMQNAAPAS VSMLNVDDCS GSGSGSGSGL LNVADCSGLG SGLAIDAMTE EDVDRLLMHF  360
TENDEATGDI YSGLGDLFDP SALNIDWSDL ADPSAAENGD WGDCFIEMND LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46516112166NO APICAL MERISTEM PROTEIN
1ut4_B1e-46516112166NO APICAL MERISTEM PROTEIN
1ut7_A1e-46516112166NO APICAL MERISTEM PROTEIN
1ut7_B1e-46516112166NO APICAL MERISTEM PROTEIN
4dul_A1e-46516112166NAC domain-containing protein 19
4dul_B1e-46516112166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862009.10.0NAC domain-containing protein 82-like
TrEMBLA0A0K9RG690.0A0A0K9RG69_SPIOL; Uncharacterized protein
STRINGXP_010674451.11e-150(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-83NAC domain containing protein 103