PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_069940_xpeh.t3 | ||||||||
Common Name | SOVF_069940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 253aa MW: 27830.2 Da PI: 9.5207 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.6 | 9e-28 | 92 | 174 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g Sp_069940_xpeh.t3 92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEyadasnalgtneppgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 174 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 8.1E-94 | 1 | 249 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 1.3E-44 | 87 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.9E-33 | 91 | 174 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.3E-24 | 93 | 174 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.02E-20 | 94 | 175 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 3.66E-19 | 180 | 247 | No hit | No description |
SMART | SM01138 | 8.0E-7 | 181 | 251 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 6.9E-17 | 182 | 247 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MATGISQEDG ERNPRGATRS WGPAASGQSV STSGSVGSPT SRSEAGMTTP ARDSTVLRLS 60 HLEIHGDEST SQAAVVSKKK KRGQRATGTD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD 120 ELVAEYADAS NALGTNEPPG YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWRGLPRTSL 180 NDIEELKAER VGLRNRIEKK AVYLRELEEQ FIGYQNLIQR NQQLYCDGNA PTGGVALPFI 240 LVQEREKGVG ALR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-39 | 85 | 179 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021835374.1 | 1e-179 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_021835375.1 | 1e-180 | transcription factor-like protein DPB isoform X2 | ||||
Refseq | XP_021835377.1 | 1e-180 | transcription factor-like protein DPB isoform X2 | ||||
Refseq | XP_021835378.1 | 1e-180 | transcription factor-like protein DPB isoform X2 | ||||
Swissprot | Q9FNY2 | 1e-112 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0K9RI31 | 0.0 | A0A0K9RI31_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678871.1 | 1e-148 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-100 | Transcription factor DP |