PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_069940_xpeh.t1
Common NameSOVF_069940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family E2F/DP
Protein Properties Length: 394aa    MW: 43143.2 Da    PI: 7.1663
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_069940_xpeh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.42.1e-2792174271
            E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Sp_069940_xpeh.t1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEyadasnalgtneppgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 174
                        689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.2E-1231394IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.1E-4487179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-3391174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.5E-2493174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-2094175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.56E-44179282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-41180286No hitNo description
SMARTSM011389.2E-59181355IPR014889Transcription factor DP, C-terminal
PfamPF087814.9E-39182287IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MATGISQEDG ERNPRGATRS WGPAASGQSV STSGSVGSPT SRSEAGMTTP ARDSTVLRLS  60
HLEIHGDEST SQAAVVSKKK KRGQRATGTD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEYADAS NALGTNEPPG YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWRGLPRTSL  180
NDIEELKAER VGLRNRIEKK AVYLRELEEQ FIGYQNLIQR NQQLYCDGNA PTGGVALPFI  240
LVQTRPNATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK QMKFSDQPSP CDGGGACDTP  300
LAIVANNAGE GGSSTFHPQI SQPSSPEQPY HNQISQPPSP PKPYQPQTCT PPSPPSNSYQ  360
PQMLLPPSRP NTAMKTPTSP PLPGILKARV QHDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3685179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835374.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-144DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC00.0A0A0K9RGC0_SPIOL; Uncharacterized protein
STRINGXP_010678871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP