PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_068500_rmfu.t1
Common NameSOVF_068500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 399aa    MW: 44414.1 Da    PI: 8.2009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_068500_rmfu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.5e-50281541128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        + pGfrF+Ptdeel+ +yLkkk++g +  + evi+evdi+k+ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++
  Sp_068500_rmfu.t1  28 MFPGFRFSPTDEELILYYLKKKLDGFDKCV-EVIPEVDICKFEPWDLPsKAIINSDQEWFFFSPRGKKYPNGSQSKRATQIGYWKATGKERA 118
                        579***********************9777.99***************777778899*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Sp_068500_rmfu.t1 119 VKS-GSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 154
                        **9.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5722170IPR003441NAC domain
PROSITE profilePS5100553.91328170IPR003441NAC domain
PfamPF023657.4E-2530153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDGVDNGNIG NNTSISKEAE RSIAASSMFP GFRFSPTDEE LILYYLKKKL DGFDKCVEVI  60
PEVDICKFEP WDLPSKAIIN SDQEWFFFSP RGKKYPNGSQ SKRATQIGYW KATGKERAVK  120
SGSNVIGTKR TLVFHIGRAP KGERTEWIMH EYCMSGKAQD ALVVCRLRRK SDYQAMNGGP  180
NGEIQSPDPS SLMASSGTYS GCGIMELINT SARDKLVAEC SFKKSSSSHD SHSVEQMDSA  240
SQSDWKAKDE IIQPESTSNN HVGNEDDLFA EILNDSIIQL DECLPPATIG VQSIVTNNTT  300
VPIVPHLHNN PPHQSNVQRV HPSQGTANRR IRLRKLRRFS PCKDELEESL GENTVSSKPK  360
QLTKGRGWAR VLNNYARLYV VVITMALVIL AYTTAPAYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-462717016165NO APICAL MERISTEM PROTEIN
1ut4_B9e-462717016165NO APICAL MERISTEM PROTEIN
1ut7_A9e-462717016165NO APICAL MERISTEM PROTEIN
1ut7_B9e-462717016165NO APICAL MERISTEM PROTEIN
3swm_A1e-452717019168NAC domain-containing protein 19
3swm_B1e-452717019168NAC domain-containing protein 19
3swm_C1e-452717019168NAC domain-containing protein 19
3swm_D1e-452717019168NAC domain-containing protein 19
3swp_A1e-452717019168NAC domain-containing protein 19
3swp_B1e-452717019168NAC domain-containing protein 19
3swp_C1e-452717019168NAC domain-containing protein 19
3swp_D1e-452717019168NAC domain-containing protein 19
4dul_A9e-462717016165NAC domain-containing protein 19
4dul_B9e-462717016165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328334RRIRLRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859686.10.0NAC domain-containing protein 89-like
TrEMBLA0A0K9RI700.0A0A0K9RI70_SPIOL; Uncharacterized protein
STRINGXP_010692710.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.13e-82NAC domain containing protein 60