PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_064760_qzuw.t1 | ||||||||
Common Name | SOVF_064760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 15259.5 Da PI: 8.4572 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.4e-11 | 9 | 51 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV+ +k +g+W A + + +k+++lg++ t+ +Aa a+++a + Sp_064760_qzuw.t1 9 LRGVTPRK-NGKWGAAVTVN-----KKQIWLGTYETEVDAALAYDRACL 51 69***777.8******8883.....5**********99*******9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.4E-16 | 8 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.986 | 8 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.40E-19 | 8 | 62 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-14 | 9 | 63 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-6 | 9 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 10 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEGGQDIKLR GVTPRKNGKW GAAVTVNKKQ IWLGTYETEV DAALAYDRAC LKVGRLLSLN 60 FPFVTTKEIR FQDIHSQKTI IDMVKRGTYA QEYADFLSIE ALDAIIHGTE SGLMSSGDNG 120 SGGVLKEHKP VMLFGVQIG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010677110.1 | 1e-44 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A0K9RHZ1 | 1e-98 | A0A0K9RHZ1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677110.1 | 4e-44 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 7e-20 | RAV family protein |