PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_061520_hmkq.t1

Common Name

SOVF_061520

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 329aa MW: 38466.9 Da PI: 4.353

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_061520_hmkq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.6	1.6e-13	87	171	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +q + L+e+ e+ +l+r++l+ +W +v++++ +++ +r+ C+++++ l+++yk++k+ ++ + ss+++yf++++ Sp_061520_hmkq.t1 87 WLEQGTFILLEIWGERFLQLGRSSLRSEDWNDVAERVsEATRSNRTVSDCRNRLNALKMKYKREKAKVISL-GGGSSKWVYFKKMD 171 999********************************556677**********************97.78888******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-17	86	172	No hit	No description
PROSITE profile	PS51029	8.754	87	178	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDRRLNYPYS RRSKPQKSYA EEDDDEENDA VLGVIGNSDD EDDDDDNDED FNGQHRRHTP 60 TRQRRKLRKL SNWNYHSTPT PSGISDWLEQ GTFILLEIWG ERFLQLGRSS LRSEDWNDVA 120 ERVSEATRSN RTVSDCRNRL NALKMKYKRE KAKVISLGGG SSKWVYFKKM DVLMTMSPRQ 180 LQQQEQCGLA CGVDSGEFVF MNPRVYLDHS NASDEMRDSP GNSESEGGED DEEEEEDDDE 240 ENEEEAEESY RMLSESIKRV GVIYEKMEDS KKQHMEELDR MREEFQRELE LQKKEMLDQT 300 KSEIAKLGQK DDQDSDCSVE NWMTSEGRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	67	RQRRKLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021837537.1	0.0	trihelix transcription factor ASIL1 isoform X1
TrEMBL	A0A0K9RIX0	0.0	A0A0K9RIX0_SPIOL; Uncharacterized protein
STRING	XP_010688178.1	1e-159	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-73	Trihelix family protein