PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_060810_zunj.t1 | ||||||||
Common Name | SOVF_060810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 24933.7 Da PI: 4.2783 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +k+++qvtfskRr g++KKA+EL+ +C++e+a+i fs+ gkly + Sp_060810_zunj.t1 3 PIISKTKKQVTFSKRRVGVFKKASELCSMCGVEAAIITFSNGGKLYSF 50 6889******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-16 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.932 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-21 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-20 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEPIISKTKK QVTFSKRRVG VFKKASELCS MCGVEAAIIT FSNGGKLYSF GHPSADAVIR 60 RYIDTTTTND VGVLNDEVLN SQIVGGQYKD VLAQIDVEKT ETKVKTETKF MAKSQNWWDQ 120 SIDDLGLSDL ERYKAALEGL RNKVSSKVDQ IIHDSSMISK SSVAQDFDFD FDFDFDFDFD 180 FDFDFDFGSA ADRSVVGQGF DCSGDVNRED GLTGDDLLDL LLSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021864837.1 | 1e-161 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0K9RKR6 | 1e-160 | A0A0K9RKR6_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-28 | AGAMOUS-like 62 |