PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060680_phqp.t1
Common NameSOVF_060680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 401aa    MW: 45178.9 Da    PI: 6.7946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060680_phqp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08280320954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Sp_060680_phqp.t1 280 ARQRRERISERLRVLQKLVPGG-----TKMDTASMLDEAANYLKFL 320
                        69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.78271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-13277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-11277325No hitNo description
SuperFamilySSF474591.57E-13277329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-11279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDGCASMAQW SNTYHQQGVL ESSRSISMIL DPIHEEFHQE ENGQVGIPWA PRDHMCSSLG  60
MMSPLMHNNI VQSQPFDVSS ISKGTSSANS IDQQSLECLL SGTNSNTDTS VEENDDGISM  120
IFSDCRNFLN FSSNLPNNNN NNNNNNNNNN NNNNDHIKKR IIAESDNKQG DQEFPPFSIT  180
QENSTCPNLR SNKRQRIDNN NNNVDKFGQG RVTGSSNISF QQGSSSGSSV EEPDAEAIQQ  240
MKEMIYRAAA FRPVNFGVDM VERPKRKNVK ISFDPQTVAA RQRRERISER LRVLQKLVPG  300
GTKMDTASML DEAANYLKFL RNQVKALETF GNNNKLDNHN HNHNHNHFQF SPNLTTNHLF  360
PPINLQFSSM PPFPMQPTNI ITPQFSLHNP NQNLHHVLPK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841562.10.0transcription factor bHLH87
TrEMBLA0A0K9RKT10.0A0A0K9RKT1_SPIOL; Uncharacterized protein
STRINGXP_010690114.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-46bHLH family protein