PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_060120_dzqn.t1

Common Name

SOVF_060120

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 440aa MW: 49488.1 Da PI: 9.7577

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_060120_dzqn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	129	170	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++eE + l ++++++ + + +Ia +++ Rt +++k+r++ Sp_060120_dzqn.t1 129 KWSKEETDTLFELCERFDLR-FVLIADRFPSSRTVEELKDRYY 170 8*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	6.2E-30	102	176	IPR032563	DAMP1, SANT/Myb-like domain
SuperFamily	SSF46689	8.16E-7	126	177	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-9	126	175	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-6	126	174	IPR009057	Homeodomain-like
CDD	cd11658	3.39E-17	130	170	No hit	No description
Pfam	PF05499	8.7E-7	306	372	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDAKDILGLP KNALPLSQEK KSKPPKEPQR KPDGISREVY MLTGGVPPLM PAIDTSQLKR 60 RPPTDEKVTW QWLSFSNSAR KDDLKLYHWV RVVNGVPPTG DYPFAKYNKS VDVIKYTDEE 120 YENYLTNPKW SKEETDTLFE LCERFDLRFV LIADRFPSSR TVEELKDRYY CVTRAILIAR 180 APSPADVSAH QLIKEPYNVK QETERKRALS MVLSQTKYQE RKDVEVLAEA KRIHESRILA 240 KSAEEPEVPS TSDVGTENAD RTVLPGSVSP VSGAATAVAD NATTLASLRT MRVYLRTYAL 300 DQMVQAVSAS AGLRTIKRVE QTLQDLGVNL KPKVPTKSVC GEHLELRKEI LTLLNLQKQL 360 QYKEAEGSSY REGSYNTDTP ETPKRSHRAG EQDRPFVPEP SSFGGDRIGK RDQKRKGPGR 420 SSDAPSSPAT KRARKLKADG

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDAKDILGLP KNALPLSQEK KSKPPKEPQR KPDGISREVY MLTGGVPPLM PAIDTSQLKR  60
RPPTDEKVTW QWLSFSNSAR KDDLKLYHWV RVVNGVPPTG DYPFAKYNKS VDVIKYTDEE  120
YENYLTNPKW SKEETDTLFE LCERFDLRFV LIADRFPSSR TVEELKDRYY CVTRAILIAR  180
APSPADVSAH QLIKEPYNVK QETERKRALS MVLSQTKYQE RKDVEVLAEA KRIHESRILA  240
KSAEEPEVPS TSDVGTENAD RTVLPGSVSP VSGAATAVAD NATTLASLRT MRVYLRTYAL  300
DQMVQAVSAS AGLRTIKRVE QTLQDLGVNL KPKVPTKSVC GEHLELRKEI LTLLNLQKQL  360
QYKEAEGSSY REGSYNTDTP ETPKRSHRAG EQDRPFVPEP SSFGGDRIGK RDQKRKGPGR  420
SSDAPSSPAT KRARKLKADG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	3e-20	101	186	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	3e-20	101	186	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	385	ETPKRS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836734.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A0K9RJG5	0.0	A0A0K9RJG5_SPIOL; Uncharacterized protein
STRING	XP_010679468.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]