PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_059390_kjee.t1
Common NameSOVF_059390
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-X1
Protein Properties Length: 877aa    MW: 98476.6 Da    PI: 8.3804
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_059390_kjee.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.59.1e-06191209120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG H C  lCH+GpCp+Cpq
  Sp_059390_kjee.t1 191 CG-HFCLLLCHPGPCPSCPQ 209
                        **.****************8 PP
2zf-NF-X1231.7e-07243262120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H+C ++CH G+C pC++
  Sp_059390_kjee.t1 243 CGIHRCAEICHNGECSPCRE 262
                        ******************85 PP
3zf-NF-X118.83.6e-06424449120
           zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                        CG      +HkC ++CH+GpC pCp+
  Sp_059390_kjee.t1 424 CGrklrcrNHKCPSPCHRGPCAPCPL 449
                        777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.28E-774152No hitNo description
PROSITE patternPS01359079145IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.68379146IPR001841Zinc finger, RING-type
CDDcd060087.93E-5179227No hitNo description
SMARTSM004380.0013191209IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029191208IPR000967Zinc finger, NF-X1-type
CDDcd060083.31E-8233281No hitNo description
SMARTSM004384.7E-4243262IPR000967Zinc finger, NF-X1-type
PfamPF014222.2E-5243261IPR000967Zinc finger, NF-X1-type
CDDcd060089.55E-7286329No hitNo description
SMARTSM004380.012296315IPR000967Zinc finger, NF-X1-type
PfamPF014222.3296314IPR000967Zinc finger, NF-X1-type
CDDcd060084.79E-9340389No hitNo description
SMARTSM004380.54350370IPR000967Zinc finger, NF-X1-type
PfamPF014220.026350369IPR000967Zinc finger, NF-X1-type
CDDcd060082.52E-6393441No hitNo description
SMARTSM004380.052403422IPR000967Zinc finger, NF-X1-type
PfamPF014220.2403421IPR000967Zinc finger, NF-X1-type
CDDcd060083.17E-11420468No hitNo description
PfamPF014220.0027424448IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0026430449IPR000967Zinc finger, NF-X1-type
SMARTSM0043866493508IPR000967Zinc finger, NF-X1-type
PfamPF0142217497507IPR000967Zinc finger, NF-X1-type
SMARTSM00438130516561IPR000967Zinc finger, NF-X1-type
PfamPF01422110516525IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7598631IPR000967Zinc finger, NF-X1-type
PfamPF014222.2598609IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19641659IPR000967Zinc finger, NF-X1-type
PfamPF0142247641658IPR000967Zinc finger, NF-X1-type
SMARTSM004384.5704725IPR000967Zinc finger, NF-X1-type
PfamPF0142219705718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MSTTINQSQS PSSDTSDYDS DTAASSAAYL RHADLSTTIF KAYLETNGHD STSSSSPQSL  60
DLIKIQSFLN SSSSGALSCL ICLERIKSTD PTWSCNGFCF SVFHLQCIQQ WAQQSTSQAA  120
LRALTRLPIS AQTAAETSVW NCPKCRFEYS KSLIPKNYYC FCSKLENPPH DPWILPHSCG  180
EICRRPLKNN CGHFCLLLCH PGPCPSCPQL VNSRCFCGGI QDVRRCGFKE FSCNKQCIKV  240
LDCGIHRCAE ICHNGECSPC REKGVYKCQC GKVEEERECC DRNFRCDNPC AQGLDCGKHV  300
CERGCHGGVC GKCPLKGKRT CPCGRRVYEG IACDVEVKLC GATCDKKLSC GKHTCHERCH  360
RGSCVETCRI MMTKSCRCGS QTKQVPCYQD LVCERKCKRD RDCERHACRR RCCDGDCPPC  420
TEVCGRKLRC RNHKCPSPCH RGPCAPCPLM VTISCACGET HFEVPCGTET EQKPPRCRKQ  480
CQIAPLCRHR SNCKPHKCHY GTCPPCRLPC GEEYPCGHAC KLRCHGPQPP PNPEFTLKPK  540
RKKHNFQSEP TAGTPCPPCP ELVWRSCLGQ HFAAERMMIC SKNPQFSCDN LCGSPLACSN  600
HYCTKICHPR QNSSSSSDQR TRGVLCEECT LPCQKKRAPS CSHPCPLRCH PEECPPCKVL  660
LKRSCHCGAM THAFVCIYYN TLSEKEQLSA RSCGGDCHRK LSNCTHLCPE ICHPGPCPSP  720
EKCSKKVTVR CRCNNLKKEW LCLDVQTGYR NSGRDPKDIH RTQFGNGLLS CDSSCKKKAQ  780
AVESELLQRK SKAPEEKVIE NETHVPKRRK RRERVQETNQ VSKFQKFLTY LQRFVMLIIV  840
LVALVGLAYY GYKGILSLND WMNELEEQRA KTRYQRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1805811PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862762.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0K9RJJ40.0A0A0K9RJJ4_SPIOL; Uncharacterized protein
STRINGXP_010689644.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors