PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_059270_wfco.t1
Common NameSOVF_059270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 460aa    MW: 48713.9 Da    PI: 8.0875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_059270_wfco.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-104368227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       + + C +++rtG+C +G rC+++H++
  Sp_059270_wfco.t1 43 GVSDCVYYMRTGFCGFGTRCRYNHPR 68
                       6789********************96 PP
2zf-CCCH40.35.2e-1388114127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tGtCk+G +CkF+H++
  Sp_059270_wfco.t1  88 PGEPICQYYLKTGTCKFGTTCKFNHPR 114
                        5799*********************96 PP
3zf-CCCH36.77.1e-12135160227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG+Ck+G +CkF+H++
  Sp_059270_wfco.t1 135 GEKECSYYLKTGQCKFGITCKFHHPQ 160
                        7899********************97 PP
4zf-CCCH375.9e-12291317127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tG Ck+G++C+++H+p
  Sp_059270_wfco.t1 291 PGEPECQYYLKTGNCKFGASCRYHHPP 317
                        5799*********************97 PP
5zf-CCCH39.87.5e-13337362126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++t +C f++++G+Ck+G++CkF H+
  Sp_059270_wfco.t1 337 PGTQPCTFYMQNGYCKFGPTCKFDHP 362
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4694169IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-74368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-44768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.96787115IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-787114IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-1089114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-592114IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821133161IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.455290318IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7290317IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5295318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4296316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826336364IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8336363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7336364IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10337362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6339361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MELYGRNQGS EVDPPAEWGE TGLEESMWRL GLSGPETYPE RPGVSDCVYY MRTGFCGFGT  60
RCRYNHPRDR AAAVAAARLV GGEYPERPGE PICQYYLKTG TCKFGTTCKF NHPRNAGGSL  120
TNAPLNINGC PLRPGEKECS YYLKTGQCKF GITCKFHHPQ PAGMSMPAAA PPFYPTVQSP  180
SVPLHESAAG SSPGYRVARP PLVPGSYVSG SYGPVLLSPG VVPMAGWGSY SGPISPVLSP  240
GGQPAAAGGS VYGVTSLSPS TPGLAGSYAP LPYSAGKSVT GTADHKFPER PGEPECQYYL  300
KTGNCKFGAS CRYHHPPDRG ASATACFLGP LGLPLRPGTQ PCTFYMQNGY CKFGPTCKFD  360
HPVGMMKYSP SASSLAETPV APYMGASSLV TMPPSPSSTE LVPEYVLGPQ RDNQSNRTLS  420
SGLTLIPTTS VNNIQRSGQS PAQLSSSRSM GEDDEVHQSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451561e-46AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849164.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-165C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9RJK70.0A0A0K9RJK7_SPIOL; Uncharacterized protein
STRINGXP_010684493.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-132C3H family protein