PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_058360_fokh.t1
Common NameSOVF_058360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 508aa    MW: 56562.9 Da    PI: 4.4911
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_058360_fokh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36371282102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+y++++d+++++++sws+++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  Sp_058360_fokh.t1  37 FLCKTYDMVNDPTTDSVVSWSSTNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 119
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i r+k 
  Sp_058360_fokh.t1 120 LKNITRRKP 128
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-3633126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6433126IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-4033126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDSSITTATA TTTTTETITT GVNTPTPMSN VNGPPPFLCK TYDMVNDPTT DSVVSWSSTN  60
NSFIVWNPPE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KNITRRKPAH GQGHQHQQQA NSQTSAVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQSTDNQL QTMVQRLQGM EQRQQQMMSF LAKAVQSPGF LAQFVQQQTE SSKRISEANK  240
KRRLQDGVSV SESENSTPPD GQIVKYQPLG KDSAHAMLRQ LRNLDTNYNN SNSDNLYIGD  300
SSSTSAMENK AQPNRVSGVT LQEVQPTSVS PYVIPTSGVP GAVISEIKSS PVMTTSETLS  360
TPEISGLLTP ETVVPSVGLP QTNSVMPEIP SLPRILQNSV DIPGGNFMLS ETGDNDFMDL  420
TSLEFDETIP LELPDDLDAL LDEASWEQFL DRNNMIPCDS NEPEMPNVEN PTQGTEVQPL  480
DNGWEKGQRM DQLTERMGLL NSDNNQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-272812611120Heat shock factor protein 1
5d5u_B4e-273512627129Heat shock factor protein 1
5d5v_B4e-273512627129Heat shock factor protein 1
5d5v_D4e-273512627129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852225.10.0heat shock factor protein HSF8-like
SwissprotQ401521e-161HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0K9RJS20.0A0A0K9RJS2_SPIOL; Uncharacterized protein
STRINGXP_010677345.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-118heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]