PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_054190_wopx.t1
Common NameSOVF_054190
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 468aa    MW: 51374 Da    PI: 7.0782
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_054190_wopx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36e-32251306156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Sp_054190_wopx.t1 251 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 306
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.318248308IPR017930Myb domain
SuperFamilySSF466897.17E-17249309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28249309IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26251306IPR006447Myb domain, plants
PfamPF002498.2E-7253304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MMASPSELSL ECKPQSYSML LKSFVGDHNN PTDSQATHKL EEYLNRLEEE RLKIDAFKRE  60
LPLCMQLLTN AMEASRQQLQ SQKGNQGARP VLEEFMPLKL SNLEGSDQKS ANIADKANWM  120
VSAQLWSPAG DTNKLHPSTL PKSEAETGFG VSSPNLALDN KQRNGGAFLP FAKERNSVPD  180
NSNLRSLPHL ALASNERELQ DNRCMDSENG LSGSRSDNSS KGGNVVAGMA TDGQTPITTS  240
TTTTTNQTNR KARRCWSPDL HRRFVNALQM LGGSQVATPK QIRELMKVDG LTNDEVKSHL  300
QKYRLHTRRP SPSPQVAGGQ APQLVVLGGI WVPPEYAAAH GGGPTIYSTH PSTQVSSHYC  360
SPTVQPDFYP QQMVTQQAHP QALHHPALHQ HQHHQLHVYK TISHTQTHSL PESDAQGAAD  420
RSESIEDGKS DSSSWKGESG ENGGERNKLA TLRDDGEESN GSQITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-14251304154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14251304154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14251304154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14251304154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-14251304255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866139.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-124EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A0K9RN430.0A0A0K9RN43_SPIOL; Uncharacterized protein
STRINGXP_010688115.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-114G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]