PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_052800_gxnr.t1

Common Name

SOVF_052800

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 212aa MW: 23515 Da PI: 8.6141

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_052800_gxnr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.9	1.1e-10	37	88	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + hn+ E+ RR ++N+ f +Lr+llP + ++k+ s + +A +Y+ +Lq Sp_052800_gxnr.t1 37 KLDHNAKEKVRRMKLNEIFLTLRTLLPDsR---RAKRWSAPYVIDRALDYVPQLQ 88 678***********************66...8888**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-14	32	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.84E-10	33	92	No hit	No description
PROSITE profile	PS50888	12.208	35	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	37	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	37	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-6	41	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MQYYCPTTTN TTTITTAATT AGVAAVSGVG EGSSSKKLDH NAKEKVRRMK LNEIFLTLRT 60 LLPDSRRAKR WSAPYVIDRA LDYVPQLQAE VEKLTLEKNN MISVLGKKQK LQVVVDNNNV 120 ANKDNKTLTV SMNEVKNGEV IVQICEQNNN NVGMLSTLIE KLEGQGMIVL GASSQHVCED 180 RSCFHLHVQM GENPVEADYV AVLHKKIISW LS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836919.1	1e-130	transcription factor bHLH160
Refseq	XP_021836924.1	1e-130	transcription factor bHLH160
Refseq	XP_021836930.1	1e-130	transcription factor bHLH160
TrEMBL	A0A0K9RLG6	1e-156	A0A0K9RLG6_SPIOL; Uncharacterized protein
STRING	XP_010679419.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	4e-28	bHLH family protein