PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_052630_emjn.t1 | ||||||||
Common Name | SOVF_052630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 343aa MW: 37576.1 Da PI: 7.1912 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 1.9e-34 | 63 | 155 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+p+i+++tg+++++as+ a ss+s++ s+g Sp_052630_emjn.t1 63 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQHAEPSIIAATGSGTIPASALAATGSSVSQHGTSIGsalhlh 154 6999****************************************************************999555555555555655344443 PP TCP 89 k 89 + Sp_052630_emjn.t1 155 N 155 0 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-29 | 67 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.59 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVNPNNNNNN NNNNIKPAEI KDFQILITDN QNQNQLNQQE EEEDDQQQQQ QKKHQHQQQQ 60 LGPKRSSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQHAEPSII 120 AATGSGTIPA SALAATGSSV SQHGTSIGSA LHLHNHKIDD LGGPSSRPAT WAALVGMGSA 180 NLQNLGIWPP PQLPLQPHQI STASNNSSTT TTTTPPTLVP EGAHYLQKLG YPGFDLGGSN 240 LGHMNFGSIL GGNHVHQIHQ HQQNHQQHNH NHTMPGLELG LSQDGHVGVL TPQALSQIYQ 300 QMGHSRDMGS GGLSSLHQQD HHHHHQHQQH QPSNSKDDSQ ESG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849567.1 | 1e-152 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 8e-73 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0K9RNI3 | 0.0 | A0A0K9RNI3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679990.1 | 1e-110 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-63 | TCP family protein |