PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_052050_ywuc.t1

Common Name

SOVF_052050

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HSF

Protein Properties

Length: 501aa MW: 56059.7 Da PI: 4.7559

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_052050_ywuc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.2e-35	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+++++++sws n+nsfvv+d efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+l Sp_052050_ywuc.t1 27 FLSKTYDMVDDPSTDSVVSWSGNNNSFVVWDVPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 109 9******************999*************************************999.........*********** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l+ i+r+ks+ Sp_052050_ywuc.t1 110 LRGINRRKSA 119 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.3E-38	21	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.4E-60	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.08E-35	24	116	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.8E-20	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.4E-31	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.8E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.8E-20	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MGESSLEAAM AASNSHSSIN TPLPPPFLSK TYDMVDDPST DSVVSWSGNN NSFVVWDVPE 60 FARDLLPKFF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL RGINRRKSAN 120 THPQSQQSSI QNTSVKSCVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQGTDNQLQS 180 VGQRVQGMEQ RQQQMMSFLA KAMQRPGFLA QIVQQQNDGN RHVTGATKKR RLPNHDEESG 240 RTEGVHSAFS DGQVVKYQPL INEAAKSMLR EIMKLNGPLL DQSSKDPNNF LLDHVPADST 300 VVDCGSSSAR TSGVILSEVA QCSKQPFIPD ERGFSNNNAL DSEMLSSLPV GSDPAKEVQI 360 LEDELCRPEE DELMSEFKHV ILPESSPKIP DMAFSATQNP EVGFTDSLST VQNGTLLMDA 420 LEYSPGPDMG VYLPGSIDVF WEQFFPMSPL RENPEEIDSS TPEASIAREL EIDEDKGWEK 480 LHHMNHLTDQ MGLLTAETGK I

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MGESSLEAAM AASNSHSSIN TPLPPPFLSK TYDMVDDPST DSVVSWSGNN NSFVVWDVPE  60
FARDLLPKFF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL RGINRRKSAN  120
THPQSQQSSI QNTSVKSCVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQGTDNQLQS  180
VGQRVQGMEQ RQQQMMSFLA KAMQRPGFLA QIVQQQNDGN RHVTGATKKR RLPNHDEESG  240
RTEGVHSAFS DGQVVKYQPL INEAAKSMLR EIMKLNGPLL DQSSKDPNNF LLDHVPADST  300
VVDCGSSSAR TSGVILSEVA QCSKQPFIPD ERGFSNNNAL DSEMLSSLPV GSDPAKEVQI  360
LEDELCRPEE DELMSEFKHV ILPESSPKIP DMAFSATQNP EVGFTDSLST VQNGTLLMDA  420
LEYSPGPDMG VYLPGSIDVF WEQFFPMSPL RENPEEIDSS TPEASIAREL EIDEDKGWEK  480
LHHMNHLTDQ MGLLTAETGK I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-26	1	116	3	129	Heat shock factor protein 1
5d5v_B	5e-26	1	116	3	129	Heat shock factor protein 1
5d5v_D	5e-26	1	116	3	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846337.1	0.0	heat stress transcription factor A-1e-like
Swissprot	Q84T61	1e-149	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0K9RLV2	0.0	A0A0K9RLV2_SPIOL; Uncharacterized protein
STRING	XP_010671101.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-123	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]