PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_050710_kezc.t1 | ||||||||
Common Name | SOVF_050710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 22025.9 Da PI: 9.4442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.1e-20 | 27 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq+ Le F ++++ ae++ +LA++lgL+ rqV vWFqNrRa++k+ Sp_050710_kezc.t1 27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKN 81 56699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119.3 | 2.1e-38 | 27 | 118 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv++LE sF ++kLe erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ e++ Le++ +L+++l++ Sp_050710_kezc.t1 27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKNKKLENEYSKLKNQHDKVVLEKCCLETQLLSLKDQLND 118 9***************************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.779 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-20 | 25 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-18 | 25 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.28E-16 | 27 | 83 | No hit | No description |
Pfam | PF00046 | 3.1E-17 | 27 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 29 | 89 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-6 | 53 | 62 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-6 | 62 | 78 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MAPKQEGQPK RRRRRKNKGE GNSSAAKKRK LSEEQVSMLE ISFGCDHKLE AERKDRLAAE 60 LGLDPRQVAV WFQNRRARWK NKKLENEYSK LKNQHDKVVL EKCCLETQLL SLKDQLNDAK 120 NEIQKLGGRS STSSSAISSN SPSSSLTLDQ NPNIINTQLL EEQFGMGGCF DNMFYVHDTS 180 YVPNMDWVDL YM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 9 | 14 | KRRRRR |
2 | 9 | 15 | KRRRRRK |
3 | 11 | 29 | RRRRKNKGEGNSSAAKKRK |
4 | 13 | 29 | RRKNKGEGNSSAAKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849935.1 | 1e-142 | homeobox-leucine zipper protein ATHB-40-like isoform X1 | ||||
Swissprot | O23208 | 2e-57 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0K9RM94 | 1e-141 | A0A0K9RM94_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681120.1 | 1e-95 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-53 | homeobox protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|