PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_048420_mmdm.t1 | ||||||||
Common Name | SOVF_048420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TCP | ||||||||
Protein Properties | Length: 274aa MW: 31897.3 Da PI: 9.169 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.5e-35 | 86 | 202 | 1 | 133 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +agkkdrh ki T++g RdRRvRls+++a++fF Lqd+LGfdk+skt+ WLl + k+ i+e ++t s+ ++ ++ + + Sp_048420_mmdm.t1 86 PAGKKDRHTKITTAQGVRDRRVRLSMNIAREFFNLQDMLGFDKASKTLGWLLAKCKADIDEVAST---SNFKF-------------IETSIE 161 589**************************************************************...33222.............222333 PP TCP 93 saakskksqksaasalnlak..esrakarararertrekmrik 133 +++k+ +++ ++ +n+ak + r++ar+rarertr+k+ + Sp_048420_mmdm.t1 162 ETKKR--ETNYLKNGRNVAKesKRREEARERARERTRNKKIVN 202 33333..3333444577777335569************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-32 | 88 | 164 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.633 | 89 | 147 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.783 | 181 | 198 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MFSSDNSSLP LYYNQSPSFT SNDNPESNNI FFQHFHHEKL LSTNYPPISD NSIVNLSSQP 60 SINQQETILC PTNNVTMNRV SSSNRPAGKK DRHTKITTAQ GVRDRRVRLS MNIAREFFNL 120 QDMLGFDKAS KTLGWLLAKC KADIDEVAST SNFKFIETSI EETKKRETNY LKNGRNVAKE 180 SKRREEARER ARERTRNKKI VNNHHINHVN HPQSSYNYYN YEMINSKYDQ ESCGYYNDYV 240 NQPPGFPDLN IINLSTEVQI NSRPWETYNN QILH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021847095.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A0K9RPV7 | 0.0 | A0A0K9RPV7_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-27 | TCP family protein |