PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_048190_wgha.t2 | ||||||||
Common Name | SOVF_048190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ARF | ||||||||
Protein Properties | Length: 812aa MW: 90630.8 Da PI: 6.4755 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.7e-23 | 125 | 226 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Sp_048190_wgha.t2 125 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 212 99*****************************8544444..48************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ Sp_048190_wgha.t2 213 WNEKNQLLLGIRRA 226 8899999****997 PP | |||||||
2 | Auxin_resp | 118 | 7.8e-39 | 251 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Sp_048190_wgha.t2 251 AAHAANTNSCFTVFFNPRASPSEFIIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 334 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.19E-48 | 112 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-42 | 118 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-21 | 124 | 225 | No hit | No description |
Pfam | PF02362 | 1.3E-21 | 125 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.379 | 125 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-24 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.7E-34 | 251 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.8E-8 | 703 | 801 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-7 | 709 | 788 | No hit | No description |
PROSITE profile | PS51745 | 23.464 | 715 | 799 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MKLSTSGLGQ QGGEKKCLNS ELWHACAGPL VCLPTAGSRV VYFPQGHSEQ VAATTNRDVD 60 GQIPNYPSLP AQLICQLHNV TMHADVETDE VYAQMTLQPL SPQEQKDIYL PADFGIPSRQ 120 PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQQP PAQELVARDL HDVEWKFRHI 180 FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS 240 DSMHIGLLAA AAHAANTNSC FTVFFNPRAS PSEFIIPLSK YVKAVYHTRV SVGMRFRMLF 300 ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF 360 PMYPSLFPLR LKRPWHAGTS SLSDNIDDAA NSLMWLRGQG GEQGLNSMNF QSLGMFPWMQ 420 TRADNLLPLG NQNQQYQALL SSNFQNLRGS DVLNPQMMQF QHPVQYLQQS TGQIPMLQQQ 480 QQQQQQLFHP SIAQQLLQGQ SQVSKDNLPL PQRILPQEYF KQNEGLANQQ LCGSEAYSLS 540 NNEMQSRQQH HTMSSSLGKA DTSTANAELP SQSPVQNMMS STRTEGISSL SDMSNVNHTM 600 LNEQTSQHPM VSLNSYTPIN AFGDAVSLPP YPGKDASLET GNCSLDVQNH NVFGANLDSS 660 GLVLPMTMPT TYRNSSHDTD LCSIPSGFHN PMYGCNSNSP ELHSEGQGDL QTPTRTFVKV 720 YKSGSVGRSL DISRFSSYHE LREELGQMFG IEGKLDDPLR SGWQLVFVDR ENDVLLLGDD 780 PWEAFVYNVS YIKILSPEDV QKLGKHGTET YS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 10 | 355 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854185.1 | 0.0 | auxin response factor 8 isoform X2 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A0K9RPP2 | 0.0 | A0A0K9RPP2_SPIOL; Auxin response factor | ||||
STRING | XP_010675199.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |