PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_047280_oyje.t1

Common Name

SOVF_047280

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 620aa MW: 68283.8 Da PI: 6.4687

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_047280_oyje.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	277.2	5.1e-85	226	619	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvse......lykalppsetsekn.........sseel 78 + L+++A+a++s+d e+++ +Larl+++ +sp g+p+qR+a+yf+eAL++ + ++++ + + l+p +++++ Sp_047280_oyje.t1 226 DDLIRAAQAFESNDSEQVHVILARLNQRlRSPLGKPLQRAAFYFKEALQHLTTTTTTTdndhsnTPSMLSPP-----PrppkltsyeVVQTI 312 679**********************99****************99887332211111122223222.....1233345566999 PP GRAS 79 aalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesgskeel 158 a+k+fs +sP+ fs ++aNqaIle+v +HiiDfdi+ G++W++++++L +++++ + lRiT+++++e e Sp_047280_oyje.t1 313 RAHKAFSGISPVSLFSTFAANQAILESVVDGssPFIHIIDFDIGFGGHWASFMRELVDKASDhnhqgkvsssSMVLRITAIVPEE--FGIES 402 ************************975443689*******************99444455566655889****66..77888 PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.. 248 + ++e+L++fA+ l+++f++++++ ++e l++++ ++ +gE++aV+l+ ++++ + s +++s ++++L ++++sP vvvv++e+ Sp_047280_oyje.t1 403 KLVKENLNQFARDLNLNFHIDFVLIPTFEILSYKSVKIMEGEKVAVHLSPAVFNRF--SNNSRSGISKFLGDLRGISPSCVVVVDKEVGIda 492 99**********************************************9999..555556679****************76554 PP GRAS 249 nsesFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 +++sF fl +e+y+ +++s+e+ + + ++ +E ++l+++i +v ++ + + r++ +Wre++ +aG+++v +s++a q Sp_047280_oyje.t1 493 GTASFGPTFLAGIEFYTGMMESIEVASAGGFtgggDSMRRIETFVLRPRIFAAVEAAARVSAGRRT---TWREAFVAAGMRAVGFSQFADFQ 581 999****************8874333235559999***********999999666666...9****************** PP GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a++llr+ ++ g++v +++g+++l W+drpLv++SaWr Sp_047280_oyje.t1 582 AECLLRRAQVGGFHVAKRHGEMILFWHDRPLVATSAWR 619 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.083	198	599	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-82	226	619	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0030154	Biological Process	cell differentiation
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MKVPLTTPQT CKSTTGNTTA TTTITTSNAT SNNNNNNNNN TTFDSPNSIT TTNSTNLCYE 60 PTSVLDLQRS PSSPTGATTK TDTKNSNTNP TTDLDNLEGW DSILSELGLN DDSNSNNPKL 120 LLSQISSSCD TTQHHQVLPD FTSTHHFNQN QPSSLDLSSD YANFCDFSYN NNNNNNNSNN 180 NQNFNPNFGH FDQQQQQQQQ QHLHPQLLQP HQTANTNPSF GIDFLDDLIR AAQAFESNDS 240 EQVHVILARL NQRLRSPLGK PLQRAAFYFK EALQHLTTTT TTTDNDHSNT PSMLSPPPRP 300 PKLTSYEVVQ TIRAHKAFSG ISPVSLFSTF AANQAILESV VDGSSPFIHI IDFDIGFGGH 360 WASFMRELVD KASDHNHQGK VSSSSMVLRI TAIVPEEFGI ESKLVKENLN QFARDLNLNF 420 HIDFVLIPTF EILSYKSVKI MEGEKVAVHL SPAVFNRFSN NSRSGISKFL GDLRGISPSC 480 VVVVDKEVGI DAGTASFGPT FLAGIEFYTG MMESIEVASA GGFTGGGDSM RRIETFVLRP 540 RIFAAVEAAA RVSAGRRTTW REAFVAAGMR AVGFSQFADF QAECLLRRAQ VGGFHVAKRH 600 GEMILFWHDR PLVATSAWRC

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MKVPLTTPQT CKSTTGNTTA TTTITTSNAT SNNNNNNNNN TTFDSPNSIT TTNSTNLCYE  60
PTSVLDLQRS PSSPTGATTK TDTKNSNTNP TTDLDNLEGW DSILSELGLN DDSNSNNPKL  120
LLSQISSSCD TTQHHQVLPD FTSTHHFNQN QPSSLDLSSD YANFCDFSYN NNNNNNNSNN  180
NQNFNPNFGH FDQQQQQQQQ QHLHPQLLQP HQTANTNPSF GIDFLDDLIR AAQAFESNDS  240
EQVHVILARL NQRLRSPLGK PLQRAAFYFK EALQHLTTTT TTTDNDHSNT PSMLSPPPRP  300
PKLTSYEVVQ TIRAHKAFSG ISPVSLFSTF AANQAILESV VDGSSPFIHI IDFDIGFGGH  360
WASFMRELVD KASDHNHQGK VSSSSMVLRI TAIVPEEFGI ESKLVKENLN QFARDLNLNF  420
HIDFVLIPTF EILSYKSVKI MEGEKVAVHL SPAVFNRFSN NSRSGISKFL GDLRGISPSC  480
VVVVDKEVGI DAGTASFGPT FLAGIEFYTG MMESIEVASA GGFTGGGDSM RRIETFVLRP  540
RIFAAVEAAA RVSAGRRTTW REAFVAAGMR AVGFSQFADF QAECLLRRAQ VGGFHVAKRH  600
GEMILFWHDR PLVATSAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-21	230	618	24	377	Protein SCARECROW
5b3h_D	6e-21	230	618	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835396.1	0.0	scarecrow-like protein 15
TrEMBL	A0A0K9RN80	0.0	A0A0K9RN80_SPIOL; Uncharacterized protein
STRING	XP_010667697.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	1e-105	GRAS family protein