PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046870_gztn.t1
Common NameSOVF_046870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 358aa    MW: 39483.8 Da    PI: 6.6045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046870_gztn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14173221154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +r +h e+Er+RRd++N++f  Lr ++P        K++Ka+ L  Av YI++L
  Sp_046870_gztn.t1 173 QRSNHVEAERQRRDKLNQRFYALRAVVPYV-----SKMDKASLLSDAVTYINEL 221
                        799**************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-1440130IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.53E-15172226No hitNo description
PROSITE profilePS5088817.555172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-19173237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-12173221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-19173238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-16178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTMAASRPVL VCSDGYLKSS VRSNVVSKHN EGMEELGERV MSEWFYAVSL SKVLEIEEKD  60
MLIGKAMSSG TYLWLIGYSS GCERAKEALL HNVRTLVFIP VVASGEVIEV GSLDEINEDR  120
SLIELTRLIF NGNGNDNCNS NSNSNSNISC SKSGIRASAG APAGAGAPAG TMQRSNHVEA  180
ERQRRDKLNQ RFYALRAVVP YVSKMDKASL LSDAVTYINE LKTSVQELEE QIRGLQSAKN  240
ITAVSTTLSS TNNTTPRMHG QHHLPHVKTS FWAVEVEVDV KPIGKQVVIR VQTSGLDHPE  300
ARLMNVLKEL RLEICYATIS NVNEVVFQNV IATLPSYPDE IISTQEGLTN AIRERLHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-22176225857Transcription factor MYC2
5gnj_B2e-22176225857Transcription factor MYC2
5gnj_E2e-22176225857Transcription factor MYC2
5gnj_F2e-22176225857Transcription factor MYC2
5gnj_G2e-22176225857Transcription factor MYC2
5gnj_I2e-22176225857Transcription factor MYC2
5gnj_M2e-22176225857Transcription factor MYC2
5gnj_N2e-22176225857Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855535.10.0transcription factor bHLH14-like
TrEMBLA0A0K9RQ500.0A0A0K9RQ50_SPIOL; Uncharacterized protein
STRINGXP_010677037.17e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-38bHLH family protein