PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_046330_mgzy.t1 | ||||||||
Common Name | SOVF_046330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 25058.5 Da PI: 9.657 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.3 | 3.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+nk nrqvtfskR++g+ KKA+E+SvLCda+va+i+fs++gk + y+s Sp_046330_mgzy.t1 9 KKIDNKVNRQVTFSKRKTGLVKKAHEISVLCDADVALIVFSHRGKHFQYCS 59 68*******************************************999986 PP | |||||||
2 | K-box | 85.4 | 1.2e-28 | 89 | 174 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ ++a Lk++ e L r++R+++G+dL+sL+ ke+q+Le qL+++lk+iR++Kn+l++e+i elqkkek++ e+n+ L k+++ Sp_046330_mgzy.t1 89 QVNWTIDFAHLKAKAELLHRNHRQYMGQDLGSLNNKEIQSLELQLDTALKSIRARKNHLMHESICELQKKEKAMVEHNNVLAKEIK 174 4589999***************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.95E-39 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-24 | 88 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.038 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRGKVQLKK IDNKVNRQVT FSKRKTGLVK KAHEISVLCD ADVALIVFSH RGKHFQYCSD 60 NSMEKILERY ERYCYAEKRL HPNNDPDIQV NWTIDFAHLK AKAELLHRNH RQYMGQDLGS 120 LNNKEIQSLE LQLDTALKSI RARKNHLMHE SICELQKKEK AMVEHNNVLA KEIKDREKNM 180 AEVQQMQLQS SSQHQSGQGH PDASNFLLSQ ASTSYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 5e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 5e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 5e-21 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU726485 | 0.0 | EU726485.2 Spinacia oleracea APETALA1-2 (AP1-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850106.1 | 1e-161 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-85 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0K9RQG2 | 1e-160 | A0A0K9RQG2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681126.1 | 3e-96 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-82 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|