PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_046240_wzmm.t1

Common Name

SOVF_046240

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 274aa MW: 31557.6 Da PI: 4.8108

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_046240_wzmm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.7	1.7e-26	105	155	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++ e +s+yF++pi+ AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Sp_046240_wzmm.t1 105 SKTLTKEIISQYFYMPITRAAKELNVGLTLLKKRCRELGIQRWPHRKLMSL 155 5899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	91	175	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-22	107	155	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSIDATPLM ECFPDDPSYP FYSSLDIMST FTIPHVIQDT KTIYDGYGNG FEGLHDLELE 60 KAPPLPPPLP PPLGLCHDDS NHQTREDLVE NKNVFQEKEN NNNVSKTLTK EIISQYFYMP 120 ITRAAKELNV GLTLLKKRCR ELGIQRWPHR KLMSLQTLIR NVQEMEKEGG DKNEAKLREA 180 IQILEQEKKL MEEMPDLQLE TRTKRLRQAC FKANYKKRKL INNMNNYDIS PQSSSSASTS 240 NDNANYEISK GNNDDYGDDD EDVMDVMNFP YFCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859864.1	0.0	protein RKD1-like
TrEMBL	A0A0K9RQK2	0.0	A0A0K9RQK2_SPIOL; Uncharacterized protein
STRING	XP_010678556.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-56	RWP-RK domain-containing protein