PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_045090_gksa.t1 | ||||||||
Common Name | SOVF_045090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35942.1 Da PI: 5.5726 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.9e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL kk+++++ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ + Sp_045090_gksa.t1 10 LPPGFRFYPSDEELVCHYLYKKIANEEALK-GTLVEIDLHTCEPWQLPEVAKLNTTEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRVI 100 79***********************99544.78***************88888999************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 l+ ++e+vg++ktLvfyk+rap+g kt W+mhe+rle Sp_045090_gksa.t1 101 LEPrTRETVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 *9867888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEALKG TLVEIDLHTC EPWQLPEVAK 60 LNTTEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRVI LEPRTRETVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLESP HMPPKEDWVL CRVFHKSKSE ENNNNNNNNQ CQHTYEHNTT 180 TTSPPTCYTC QQQTNSSSNY SHPIILPPHQ ESSIILTNNN PNNIINNLIT TSPSSLNPII 240 PMSYSWSDLV SSSVKNDEDE YGGLLWDIEM DEDQSSKLGD NNGDLHNVPP SCCLPQLGFG 300 DVRFDQDDCG VVFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 9 | 162 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 9 | 162 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 9 | 162 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021854992.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 8e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0K9RP29 | 0.0 | A0A0K9RP29_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679326.1 | 1e-156 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-90 | NAC domain containing protein 74 |