PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_044430_jryo.t1
Common NameSOVF_044430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 437aa    MW: 45888.2 Da    PI: 8.4836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_044430_jryo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309.2e-10427226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k e+Cr+f+r G+C++Gd+C+F H+
  Sp_044430_jryo.t1  4 KPEPCRNFLR-GHCRFGDKCNFPHV 27
                       789*******.***********886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.14229IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-5329IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPLKPEPCRN FLRGHCRFGD KCNFPHVTQQ QPKPNAFGFG SQTATQSQQQ KPNPFGFGVQ  60
NSTSGAPNSG GFGQSNSQKP FENKWVRPEK PQNQSQAASH NCTDPDSCKR QIADDFQHES  120
PLWKLTCYGH NKHLPCDISG DISYEELRAV AYDDAKRGTS LPSIVERERG LVNSKKIEFQ  180
NLLNNPYTKH TVPAQSNQSP FPAAVASSPS PTPQNNGFSS FAASNQQNPP PNLSFGVRPS  240
TPSNSSGFGQ FQGPGQFTTN TVPSGPFSTP VPAQTGGNLP ASNNSGFGNS GFGNNGLKSG  300
SFGTQVPAQT GGNFAPNIGG FGNSAMSGQG SLFPAQTGGN TFTPNSLGFG NVGMTSQVPV  360
QIGGTPFTSN VGGFGNSGMS SQGSQPPSTS LGGANGGQQT IGSNPQEISA TDTGIWLKEE  420
WKLGEIPEQP PPAAYVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864397.10.0zinc finger CCCH domain-containing protein 16 isoform X1
SwissprotQ9FWS33e-60C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A0K9RP590.0A0A0K9RP59_SPIOL; Uncharacterized protein
STRINGXP_010669635.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-59C3H family protein