PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_043680_jjwy.t2

Common Name

SOVF_043680

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 1035aa MW: 115218 Da PI: 9.1181

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_043680_jjwy.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	42	77	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E e+++da +++G + Wk++a + R+ +++ Sp_043680_jjwy.t2 42 QWSRHEIERFYDAYRKHGQD-WKKVAVVVR-SRSTEMV 77 6***************99.******9.9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-8	39	86	IPR009057	Homeodomain-like
SMART	SM00717	0.0097	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-6	42	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-4	43	77	No hit	No description
Pfam	PF06584	3.0E-29	570	670	IPR033471	DIRP domain
SMART	SM01135	4.0E-48	570	671	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence Send to blast
MAPAKKLKSV NRGITSASDS SPSKDDKSKQ KKRKLSDMLG PQWSRHEIER FYDAYRKHGQ 60 DWKKVAVVVR SRSTEMVEAL YNMNRAYLSL PEGTASVVGL IAMMTDHYNV QEGSGSEKES 120 EVPEVMVRKI QKNPKAKGLL GSSRDDSKRQ SVGSIDGCLS LLKNRGDGIQ LHFPVRKRTP 180 RVPVSCLDIH PNKKSRVSAR NADDSGVPHR DLRLKEAWCN PNSPHGSQIT DRKNEHLRTQ 240 VSAREEISQF PVLKARNGGF AADEEPKEGS LGYNGTKNDN WARDMDTGKS ALIEYKKGKK 300 GKKGKKEEVQ NSEATLFDNI REAYNYADKG PRRNGSDGKS VKVCRSSFEG QRKRSKQLTC 360 EDELAACDAL QTLAEMSSMM DLAAVPVEDA RESIIGRDTI VNSVVRPDVE FSDEKANGES 420 KKKRVSQALK VPKAEFPDDY SKKATKDESM AEEVKSGDST GHISVFSKKC TSLLRAPDVS 480 SSNDSHAGDT EVAVSSGQVH CDSQVVNPSR RKRRRKQDRT VLQKDRNYDP SGCSSDRSSV 540 PQDSLQDVKG RLLHCLSWHE VRRWCVYEWF YSAIDYPWFA KREFVEYLDH VGLGHIPRLT 600 RFELGVIRNS LGKPRRFSAR FLREERKKLQ QYRESVRTQY ANLRAGHGEG LPTDLACPLY 660 VGQKVVAIHP KTRECHNGSV LTVDRDNCMV QFHHPDLGVE LVMDIDCMPL NLLENMPEDL 720 KRRNMLFDYR YVQVPKIKGA IISGLEDHNK NSGHHIRVPS FSPSIAADMK VKPACLSSCA 780 KVLGNGSFKT TSAAQNKSCN MAQLHRQEGH MRDFPGLTGG IDRKVFDQQR RCPENFPSFP 840 HPITDTVGLN GTMHSLNISG FSCQETASNV AEIVEGSRDK AQKMVNTAMK AMSIMKEGED 900 AFGRISEALD ARGKTRAANC RTPIITSSIR GSLPHQNPLT SCASDPPLSC DAVTVQSVGD 960 SGSDDLSDLI TSCVATLLMI QTCTERQYPP AEVAQILDNA ATSLHPCCPK NLSIYREIQM 1020 CMGRIKTQIL ALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence Send to blast

MAPAKKLKSV NRGITSASDS SPSKDDKSKQ KKRKLSDMLG PQWSRHEIER FYDAYRKHGQ  60
DWKKVAVVVR SRSTEMVEAL YNMNRAYLSL PEGTASVVGL IAMMTDHYNV QEGSGSEKES  120
EVPEVMVRKI QKNPKAKGLL GSSRDDSKRQ SVGSIDGCLS LLKNRGDGIQ LHFPVRKRTP  180
RVPVSCLDIH PNKKSRVSAR NADDSGVPHR DLRLKEAWCN PNSPHGSQIT DRKNEHLRTQ  240
VSAREEISQF PVLKARNGGF AADEEPKEGS LGYNGTKNDN WARDMDTGKS ALIEYKKGKK  300
GKKGKKEEVQ NSEATLFDNI REAYNYADKG PRRNGSDGKS VKVCRSSFEG QRKRSKQLTC  360
EDELAACDAL QTLAEMSSMM DLAAVPVEDA RESIIGRDTI VNSVVRPDVE FSDEKANGES  420
KKKRVSQALK VPKAEFPDDY SKKATKDESM AEEVKSGDST GHISVFSKKC TSLLRAPDVS  480
SSNDSHAGDT EVAVSSGQVH CDSQVVNPSR RKRRRKQDRT VLQKDRNYDP SGCSSDRSSV  540
PQDSLQDVKG RLLHCLSWHE VRRWCVYEWF YSAIDYPWFA KREFVEYLDH VGLGHIPRLT  600
RFELGVIRNS LGKPRRFSAR FLREERKKLQ QYRESVRTQY ANLRAGHGEG LPTDLACPLY  660
VGQKVVAIHP KTRECHNGSV LTVDRDNCMV QFHHPDLGVE LVMDIDCMPL NLLENMPEDL  720
KRRNMLFDYR YVQVPKIKGA IISGLEDHNK NSGHHIRVPS FSPSIAADMK VKPACLSSCA  780
KVLGNGSFKT TSAAQNKSCN MAQLHRQEGH MRDFPGLTGG IDRKVFDQQR RCPENFPSFP  840
HPITDTVGLN GTMHSLNISG FSCQETASNV AEIVEGSRDK AQKMVNTAMK AMSIMKEGED  900
AFGRISEALD ARGKTRAANC RTPIITSSIR GSLPHQNPLT SCASDPPLSC DAVTVQSVGD  960
SGSDDLSDLI TSCVATLLMI QTCTERQYPP AEVAQILDNA ATSLHPCCPK NLSIYREIQM  1020
CMGRIKTQIL ALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	515	RRKRRRK
2	509	516	RRKRRRKQ
3	510	514	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851154.1	0.0	protein ALWAYS EARLY 2-like isoform X2
TrEMBL	A0A0K9RPB8	0.0	A0A0K9RPB8_SPIOL; Uncharacterized protein
STRING	XP_010674727.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-120	DNA binding