PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_042910_wwfp.t2
Common NameSOVF_042910
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 491aa    MW: 53559.8 Da    PI: 7.88
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_042910_wwfp.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.63.3e-18141228187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk +++++++    + s++p+f+++ea
  Sp_042910_wwfp.t2 141 EWSDTAIDCLLDAYTDKYTQLNRGNLRGRDWEEVAAIVsdRCENQHKSVEQCKNKVDNLKKRYKLERHRMSSAGILV-SHWPWFKKMEA 228
                        5*************************************8888999**************************985555.5********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-21139229No hitNo description
Gene3DG3DSA:3.40.1160.104.5E-59272490IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536339.03E-46282490IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.9E-19284490IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.21E-84284490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASCDDDFSL LAGDDHHHHH HHHLHQFNSH HRYLQPKLSS TTVSAISNDA VKVSSAGGGA  60
GSSENGGVFE VNPYESSEFD SVPDPESDPK NSRVCTESAD KRKDRERDDL SDGSYKKTRL  120
VAGAGGVLVS GAGDYRKDRE EWSDTAIDCL LDAYTDKYTQ LNRGNLRGRD WEEVAAIVSD  180
RCENQHKSVE QCKNKVDNLK KRYKLERHRM SSAGILVSHW PWFKKMEAIV GNSLSTKSAS  240
DDDKISGSSG NAGRQHKRYS VGTPGSVGQV NHMKSKSISN SKWQRVVFKI SGAALAGNGP  300
HNVDPKVVML IAREITMAHR LGVQVAIVIG GRNFFCGDTW ITATGAERST TYQIGMMATV  360
MNSVLLQSAL EKMGVQTRVQ TAFTLPEVGE PYNRQRAIRH LEKGRVVIFG GVGGGSGNPL  420
FSTDTTAALR ATDLNAQAVL KGINVDTIYD CNSRSNGLTF EHISFREVAS RGASSMDVMA  480
LTFCEENAIP G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A8e-522754901214Uridylate kinase
3ek5_B8e-522754901214Uridylate kinase
3ek5_C8e-522754901214Uridylate kinase
3ek5_D8e-522754901214Uridylate kinase
3ek5_E8e-522754901214Uridylate kinase
3ek5_F8e-522754901214Uridylate kinase
3ek6_A8e-522754901214Uridylate kinase
3ek6_B8e-522754901214Uridylate kinase
3ek6_C8e-522754901214Uridylate kinase
3ek6_D8e-522754901214Uridylate kinase
3ek6_E8e-522754901214Uridylate kinase
3ek6_F8e-522754901214Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865520.10.0uncharacterized protein LOC110804258 isoform X3
TrEMBLA0A0K9RRD60.0A0A0K9RRD6_SPIOL; Uncharacterized protein
STRINGXP_010683919.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-174Trihelix family protein