PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_042550_qokw.t1
Common NameSOVF_042550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 756aa    MW: 84339.1 Da    PI: 6.4699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_042550_qokw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-21104159156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Sp_042550_qokw.t1 104 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 159
                        7999************************************************9877 PP
2START221.42.8e-692815034206
                        HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
              START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         + +qel k+a+++ep+Wvks     e++n+de++++f+ + +       +s+ea+r+s+vv+ +l++lv++++d++ qW+e ++    ka+
  Sp_042550_qokw.t1 281 DKSLQELKKMATSGEPLWVKSLendrEILNYDEYIKEFPVESSsgsgklrRSIEASRESRVVFVDLPRLVQSFMDVN-QWKEIFPclisKAA 371
                        56789*********************************8766699********************************.************** PP

                        EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
              START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        +++vis+g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+ ++w+ivdvS+d  +++  ++s+++++++ Sg++ie+ksngh++vt
  Sp_042550_qokw.t1 372 LVNVISNGeglnkdGAVQLMYAELQMLTPMVPtREVYFVRCCKQLSPEQWAIVDVSIDKLEDNI-DASLIKCRKRASGCIIEDKSNGHCRVT 462
                        **************************************************************98.9************************** PP

                        EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        wvehv+ +++++h+l+r +v+sgla+gak+w++tlq qce+
  Sp_042550_qokw.t1 463 WVEHVEWQKSTVHSLYRTIVNSGLAFGAKHWMSTLQLQCER 503
                        ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-2188162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-2490155IPR009057Homeodomain-like
PROSITE profilePS5007118.139101161IPR001356Homeobox domain
SMARTSM003895.6E-19103165IPR001356Homeobox domain
PfamPF000461.1E-18104159IPR001356Homeobox domain
CDDcd000865.41E-17108159No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084836.438269506IPR002913START domain
SuperFamilySSF559616.78E-33271503No hitNo description
CDDcd088753.89E-102273502No hitNo description
SMARTSM002342.0E-65278503IPR002913START domain
PfamPF018521.8E-56281503IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-6283498IPR023393START-like domain
SuperFamilySSF559612.88E-14525699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MGVDMSNNPS NSQFPKDFFS SPALSLSLAG IFRGAEDAAA EAAAKSAEVE DGEEGSGVRR  60
EDTVEISSEN SGHARSRSED DFMNVDDDDD DDGGGDDKGK KKKRKKYHRH TTEQIREMEA  120
LFKESPHPDE KQRQQLSKQL GLHPRQVKFW FQNRRTQIKA IQERHENSLL KTELEKMKEE  180
NKSLRENTQK TSCPNCGFAN TSRDSTVTAD DQQHLKLENA KLKAEVEKLR AVVGKYPPGR  240
ISPTAASHST SNYQDNNNRS SLDLYTGVFG IDKLKIMDVV DKSLQELKKM ATSGEPLWVK  300
SLENDREILN YDEYIKEFPV ESSSGSGKLR RSIEASRESR VVFVDLPRLV QSFMDVNQWK  360
EIFPCLISKA ALVNVISNGE GLNKDGAVQL MYAELQMLTP MVPTREVYFV RCCKQLSPEQ  420
WAIVDVSIDK LEDNIDASLI KCRKRASGCI IEDKSNGHCR VTWVEHVEWQ KSTVHSLYRT  480
IVNSGLAFGA KHWMSTLQLQ CERSVFFMAT NVPTKDSSGV ATLAGRKSIL KLAHRMTWSF  540
CRAIGASTFN TWTKITTKTG EDVRVASRKN LNDPCEPIGV ILCAVSSVWL PVSPTVLFDF  600
LRDDAHRHEW DVMAKGGQVQ TIVNLAKGQD RGNSVSIQTM KSKDKITWVL QDSSTNSYES  660
MVVYAPVEIP GLQSVMTGCD SSNVPVFPSG FSILPDGSES RPLVLTSRQE EEKSSEGGSL  720
LTIALQVVTN SSPAAKLTVE SVEPVQYKGE VYEASY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104KKKKRK
299105KKKKRKK
3101105KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862846.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0K9RPV80.0A0A0K9RPV8_SPIOL; Uncharacterized protein
STRINGXP_010691342.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]