PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_042290_ugjt.t1 | ||||||||
Common Name | SOVF_042290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24360.3 Da PI: 4.7439 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 4 | 56 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ Fe++ ++ +++ + A++lgL+ rqV +WFqN+Ra+ k Sp_042290_ugjt.t1 4 KRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARFK 56 568************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.5e-38 | 3 | 94 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+++eqvk+LE+ Fe+e+kLep++Kv++areLglqprqva+WFqn+RAR+k+kqlEk+y++Lk++y++l+++ e L+ke+++L ++++ Sp_042290_ugjt.t1 3 NKRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARFKSKQLEKEYTTLKSSYNSLAKRFEDLKKEKQSLLVQIEK 94 69************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.3E-15 | 1 | 62 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.973 | 1 | 58 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-13 | 4 | 59 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 4 | 56 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-16 | 4 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 5 | 61 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.3E-5 | 29 | 38 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 33 | 56 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-5 | 38 | 54 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-12 | 58 | 98 | IPR003106 | Leucine zipper, homeobox-associated |
Gene3D | G3DSA:1.20.5.400 | 6.2E-4 | 62 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MMNKRRFTDE QVKSLESIFE NETKLEPKKK VQVARELGLQ PRQVAIWFQN KRARFKSKQL 60 EKEYTTLKSS YNSLAKRFED LKKEKQSLLV QIEKLKDEAE KKSCNTNSIE RAAEDEDEKS 120 KSVKKRDEYE VKPALSLEGS EYGGCSMISD EGSSENTNYF GMEEETELLK LVQPVVVDSS 180 LTSGEGWDDL RPDGLFDQAV DSCQWWDFWS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846961.1 | 1e-151 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A0K9RPS8 | 1e-150 | A0A0K9RPS8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692437.1 | 1e-110 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-54 | homeobox 7 |