PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_042010_qucd.t1 | ||||||||
Common Name | SOVF_042010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 430aa MW: 48163.4 Da PI: 5.054 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.9 | 1e-32 | 55 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e+ ++ L+k+ g++ + +e+i++vd i++++P++Lp vk + + +fF+++ k+y+tg+rk+r+++ Sp_042010_qucd.t1 55 LPRGVKFDPTDQEITQHLLAKSGIGDEaphpfI--DEFIPTVDeddgICYTHPENLP-GVKRDGSASHFFHRAIKAYNTGTRKRRKIHgnnl 143 799************999988866666675432..334666644556**********.677888999******************8654555 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 + +W++tg++k+vl +ge++g+kk++v+y + k+ekt+Wvmh+y+l Sp_042010_qucd.t1 144 gDVRWHKTGRTKPVLL-NGEQKGCKKIMVLYvAVKGGKPEKTNWVMHQYHL 193 5889************.999***********644777778*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-37 | 40 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.993 | 55 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-14 | 56 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
RSWLVDGNRF ATKIKCASGS CDLGNIKWKS NPTRSCPNCH HTIDNNDVGQ EWPGLPRGVK 60 FDPTDQEITQ HLLAKSGIGD EAPHPFIDEF IPTVDEDDGI CYTHPENLPG VKRDGSASHF 120 FHRAIKAYNT GTRKRRKIHG NNLGDVRWHK TGRTKPVLLN GEQKGCKKIM VLYVAVKGGK 180 PEKTNWVMHQ YHLGIEEDEK DGSHVISKVF YQQQQLVKQS EKTTGYISDV AEDSVVKVDP 240 VTPKSVTPDP PRNEMRLHTK NDISSVNCNS GAQDREMGFA DEVQQEITIS SGVNDSIKDD 300 CIDITSQDPV LEHGDNTVEE EKWWDSESQY LLNSQQLVEG LSLCDELLQS QSPNRNGSTN 360 TDDVAKKRYV LSEYARLGPD DLKKDLEDCQ NLVLDPANID LDTPPDFRLS QLEFGSQDSY 420 SAWGLGKTTD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-13 | 55 | 193 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850014.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-173 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0K9RQ22 | 0.0 | A0A0K9RQ22_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010695823.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-175 | NAC family protein |