PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_041750_mrge.t1 | ||||||||
Common Name | SOVF_041750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | GATA | ||||||||
Protein Properties | Length: 153aa MW: 16684 Da PI: 10.9106 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.6 | 8.2e-19 | 28 | 62 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ Sp_041750_mrge.t1 28 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 62 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.03E-13 | 22 | 62 | No hit | No description |
SMART | SM00401 | 8.8E-14 | 22 | 77 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.479 | 22 | 58 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.28E-12 | 27 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-15 | 27 | 62 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.3E-17 | 28 | 62 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 28 | 53 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MVDLNDKKSS EPDGVSSTES QGNEFKRCAD CGTSKTPLWR GGPAGPKSLC NACGIRSRKK 60 RRAILGLKPE EKRSRKINNG RSMTSSSSSS SSSESRFGRS GSPLHRRLIA LGREVMMQRS 120 TVDKKLQRGM KKLGEEEQAA VLLMALSYGS VYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021848356.1 | 1e-107 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 8e-42 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A0K9RRQ8 | 1e-106 | A0A0K9RRQ8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010670911.1 | 2e-68 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-41 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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