PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041720_iowe.t3
Common NameSOVF_041720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 688aa    MW: 75565.1 Da    PI: 6.3558
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041720_iowe.t3genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.4e-29213266155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Sp_041720_iowe.t3 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                        79*******************.********************************8 PP
2Response_reg76.87.7e-26371451109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ + +l+++l+  +y ev+ +  +e al ll+ek+  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +
  Sp_041720_iowe.t3  37 VLVVDDDPTCLTILEKMLRTCRY-EVTKTNRAEYALSLLREKKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKQVVMKGV 126
                        89*********************.***************999999**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +e+l +
  Sp_041720_iowe.t3 127 THGACDYLIKPVRIEALKN 145
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-17012657IPR017053Response regulator B-type, plant
SuperFamilySSF521726.97E-3434156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-4034158No hitNo description
SMARTSM004482.5E-2735147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.09636151IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2337145IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.06E-2538150No hitNo description
PROSITE profilePS5129411.048210269IPR017930Myb domain
SuperFamilySSF466893.58E-20210270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30212271IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-25213266IPR006447Myb domain, plants
PfamPF002499.9E-8215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MNLGGGLMGS MSMPSSTASR KSVDSVTGDV FPVGLRVLVV DDDPTCLTIL EKMLRTCRYE  60
VTKTNRAEYA LSLLREKKNG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKQ  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKKKYDYKD VEQSGSWDEG DRQLKQDDAV  180
SSPANDGSWK NSKRKSGEDE DTDEKDDNAT LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQGG LNNSFMPQDP TFSTISSLGG  300
IDLQTLAATG QFSAQTLAAY TRLPPSIKPG MSMPFVDQRS LFSFENSKLR YGEGQQQQQQ  360
QQQQQQAQIN NVNKQMNLLH GIPTTMEPKQ LVGLNQSAQT LGSMSMSMSM QGNASSSHQS  420
SSLLMQQMVP QQSRGQISNE CVSSQVSRIQ PSIIGQQLQP NGNATSVLSR NGMGGYDTVS  480
QAGPVVDFSV NQISELSGNS FPLGSTPGIT SIASKGYNQE EISSDIKVTR GFVGSYDMFN  540
DHLHHKSQEW PLQNPNMFAG SSQHVVASMQ SGLNVAPSVM VNQSYVPAQK IEQNGRAIAG  600
KPMFSAGLEN HQHMGMQNVN QNFNSVLVNN SARVKAEAVS DVVNLGDNLF PERYSQEDLM  660
AVLKQQQDGI GSGGEFDFDG YTLDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22212272464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848390.10.0two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ91e-178ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-175response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]