PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_041430_wwou.t2 | ||||||||
Common Name | SOVF_041430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 127aa MW: 14289.4 Da PI: 8.7011 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.6 | 1.6e-06 | 22 | 64 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + R +++ +++ +L++l+ + +K + a++L +A+eYI+ L Sp_041430_wwou.t2 22 KRQKERKEKLGEKITTLQQLVSPY-----GKTDTASVLFEAMEYIRFL 64 67899999*************999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.299 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-4 | 19 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-12 | 20 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-9 | 25 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.15E-6 | 25 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MTELKRTVRP IDQDNFTSIE AKRQKERKEK LGEKITTLQQ LVSPYGKTDT ASVLFEAMEY 60 IRFLHEQVKV LSAPYLHNTP VTNIEEAVHY NLRSKGLCLV PIECTAGLAG SNGADIWAPI 120 KTGSPRF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021845542.1 | 1e-89 | transcription factor bHLH153 isoform X2 | ||||
Swissprot | Q7XJU1 | 2e-48 | BH154_ARATH; Transcription factor bHLH154 | ||||
TrEMBL | A0A0K9RS43 | 2e-90 | A0A0K9RS43_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672412.1 | 1e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 9e-51 | bHLH family protein |