PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_040970_ppcu.t1
Common NameSOVF_040970
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 316aa    MW: 34151.9 Da    PI: 6.6972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_040970_ppcu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057126148123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k+F++   L  H  +H
  Sp_040970_ppcu.t1 126 YECKTCNKTFPSFQALGGHRTSH 148
                        99*********999998888777 PP
2zf-C2H2130.00031218240123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  F++   L  H+r+H
  Sp_040970_ppcu.t1 218 HECSICGSEFPSGQALGGHMRRH 240
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.42E-8125148No hitNo description
PfamPF139123.4E-13125150IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.78126153IPR007087Zinc finger, C2H2
SMARTSM003550.034126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576673.42E-8213240No hitNo description
PfamPF139121.9E-12217242IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637218245IPR007087Zinc finger, C2H2
SMARTSM003550.017218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESTEEEFSS FTTKGRRTKR QRSLLAATAS SSYRGNGGGA VVITTAGGGG GGGDCSDNNS  60
YGSSSSGADD HDIMSEVTTT EEEDMANCLI LLAQGIEKKV SKIIKSNSKT NNNNTSTSTS  120
NIIGVYECKT CNKTFPSFQA LGGHRTSHKK IKPSTPAAVR SLDTIDNHHD RDRDRNSHVF  180
DDDLIDVMEF TSKKLFLLQP NNRNNNNMNM INHKARVHEC SICGSEFPSG QALGGHMRRH  240
RAGAPTTAAV AATLPSRPMS TAAVIDSGGP RNILSLDLNL PAPDDQDEQQ IMVDDHMETK  300
FVHVLPTPTP LVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848233.10.0zinc finger protein ZAT5-like
TrEMBLA0A0K9RQ880.0A0A0K9RQ88_SPIOL; Uncharacterized protein
STRINGXP_010689246.14e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-39C2H2 family protein