PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_039410_rjun.t2

Common Name

SOVF_039410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

G2-like

Protein Properties

Length: 384aa MW: 42641.1 Da PI: 7.1257

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_039410_rjun.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.8e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Sp_039410_rjun.t2 44 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.849	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-32	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	43	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-24	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MFHHHTQPSM YPSPRMSAPQ ERQLFLQGGN GSRDSNLVLS TDAKPRLKWT PDLHERFVEA 60 VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NIHGQTPQTS SGANKTVVMS 120 ASGDKMPETS PSHTSSINIA PQTNKNLHIN EALHMQIEVQ RRLHEQLEVQ RRLQLRIEAQ 180 GKYLQAVLEK AQETLGKQNI GVVGLEAAKL QLSELVSKVS NQCLNLAFAE IAEEQHGTCP 240 KQQIQPHKPM GDCSIDSCLT SCDGPQQREH GMHNSELGLR PYNDTRFLEG NDFNGNLKEH 300 ATILFPATTP QDTGKMMFRV DGACSDLSMS VGVGGDSRDQ NTFQLDNKNY KLPPFSGDLD 360 LNTQDEPDVP SSIRHLDLNG LSWT

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MFHHHTQPSM YPSPRMSAPQ ERQLFLQGGN GSRDSNLVLS TDAKPRLKWT PDLHERFVEA  60
VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NIHGQTPQTS SGANKTVVMS  120
ASGDKMPETS PSHTSSINIA PQTNKNLHIN EALHMQIEVQ RRLHEQLEVQ RRLQLRIEAQ  180
GKYLQAVLEK AQETLGKQNI GVVGLEAAKL QLSELVSKVS NQCLNLAFAE IAEEQHGTCP  240
KQQIQPHKPM GDCSIDSCLT SCDGPQQREH GMHNSELGLR PYNDTRFLEG NDFNGNLKEH  300
ATILFPATTP QDTGKMMFRV DGACSDLSMS VGVGGDSRDQ NTFQLDNKNY KLPPFSGDLD  360
LNTQDEPDVP SSIRHLDLNG LSWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-22	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852644.1	0.0	myb-related protein 2-like isoform X4
Swissprot	Q9SQQ9	1e-112	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9RQP5	0.0	A0A0K9RQP5_SPIOL; Uncharacterized protein
STRING	XP_010672720.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-114	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]