PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_037930_ygct.t1

Common Name

SOVF_037930

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 1009aa MW: 111225 Da PI: 6.2531

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_037930_ygct.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	620	671	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Sp_037930_ygct.t1 620 AEKQISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 671 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	610	691	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-26	624	671	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-23	909	999	No hit	No description
Pfam	PF00564	1.7E-18	914	995	IPR000270	PB1 domain
SMART	SM00666	5.0E-25	914	996	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-26	914	995	No hit	No description
PROSITE profile	PS51745	24.292	914	996	IPR000270	PB1 domain
CDD	cd06407	1.14E-36	915	995	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MSEAATSSPV EEGNQTAAAG VKPFHHHLLP RTRELQFQQQ QQQQQQQYHH TAILDPCSST 60 FMDLDFGDLD ASWSFDQIPT SPLLVPNSDQ PFSPLWAFAD GGAAAVNFSD DRNLPGIRIP 120 ADLARFTPCN PEPVGENGGN EGGGDDDDKK KIPAPVMGFT PLDNFDVSFI VKERMTQALR 180 YFKESTEQNQ ILAQIWAPVK SGNHYVLTTS GQPFVLGPHS NGLNQYRTVS LMYMFSIDGE 240 SVSTLGLPGR VFRQKLPEWT PNVQYYTSKE YPRVNHAKHY NVRGTLALPV LEPSGQSCVG 300 VLELIMTSQK INYAPEVDKV CKALEAVNLK SSEILDHPNI QICNEGRQNA LAEILEVFTE 360 VCETYKIPLA QTWVPCRHRS VLAYGGGLKK SCSSFDGSCM GQVCMSTTDV AFYVVDAHMW 420 GFREACAEHH LQKGQGVAGR SFSSHGLSFC RDISRFCKIE YPLVHYARMF GLTGSFAICL 480 RSKHTGDDDY VLEFFLPLNL RDSAEQLKLV DSILGTMKQD LQNLMVASGR TLEEEKKYME 540 IIEVSGDENL DLQGEPNLST RPLSDTINGV LPPIRNSQPQ LGEPDARNAG KSVIGGSLNG 600 ISTTENKEIK KTGERKRGKA EKQISLDVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI 660 SRWPSRKINK VNRSLTKLKR VIESVQGTDG TFSLTSLAQP TIPVPVGSIS WPHGVNGTYQ 720 QQSPTSKPTE LPDERSEMPQ RSQRVDKQTE SSHEERTHEQ NGFVSKPGSG SREVSAGTST 780 SHGSCHGSPG TESKPPNGHF IPNFHDQAGN STGLIMSRQN GGESHLVSGF SMPDALLGPH 840 HHHQEEAFGG MLLEDAGSSK DLRNLCPSAA EANVDEVIPE NGWVNHPCPN PFPRVAMSAA 900 GMMPRFSARQ DMKTVTIKAT FREDIIRFKF SFSSNIVELK EEVAKRFKLE VGTFEIKYLD 960 DDHEWVLIAC DSDLQECLDI SKSSGSNMIR LLIQDILGNL GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MSEAATSSPV EEGNQTAAAG VKPFHHHLLP RTRELQFQQQ QQQQQQQYHH TAILDPCSST  60
FMDLDFGDLD ASWSFDQIPT SPLLVPNSDQ PFSPLWAFAD GGAAAVNFSD DRNLPGIRIP  120
ADLARFTPCN PEPVGENGGN EGGGDDDDKK KIPAPVMGFT PLDNFDVSFI VKERMTQALR  180
YFKESTEQNQ ILAQIWAPVK SGNHYVLTTS GQPFVLGPHS NGLNQYRTVS LMYMFSIDGE  240
SVSTLGLPGR VFRQKLPEWT PNVQYYTSKE YPRVNHAKHY NVRGTLALPV LEPSGQSCVG  300
VLELIMTSQK INYAPEVDKV CKALEAVNLK SSEILDHPNI QICNEGRQNA LAEILEVFTE  360
VCETYKIPLA QTWVPCRHRS VLAYGGGLKK SCSSFDGSCM GQVCMSTTDV AFYVVDAHMW  420
GFREACAEHH LQKGQGVAGR SFSSHGLSFC RDISRFCKIE YPLVHYARMF GLTGSFAICL  480
RSKHTGDDDY VLEFFLPLNL RDSAEQLKLV DSILGTMKQD LQNLMVASGR TLEEEKKYME  540
IIEVSGDENL DLQGEPNLST RPLSDTINGV LPPIRNSQPQ LGEPDARNAG KSVIGGSLNG  600
ISTTENKEIK KTGERKRGKA EKQISLDVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI  660
SRWPSRKINK VNRSLTKLKR VIESVQGTDG TFSLTSLAQP TIPVPVGSIS WPHGVNGTYQ  720
QQSPTSKPTE LPDERSEMPQ RSQRVDKQTE SSHEERTHEQ NGFVSKPGSG SREVSAGTST  780
SHGSCHGSPG TESKPPNGHF IPNFHDQAGN STGLIMSRQN GGESHLVSGF SMPDALLGPH  840
HHHQEEAFGG MLLEDAGSSK DLRNLCPSAA EANVDEVIPE NGWVNHPCPN PFPRVAMSAA  900
GMMPRFSARQ DMKTVTIKAT FREDIIRFKF SFSSNIVELK EEVAKRFKLE VGTFEIKYLD  960
DDHEWVLIAC DSDLQECLDI SKSSGSNMIR LLIQDILGNL GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864634.1	0.0	protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0K9RRC2	0.0	A0A0K9RRC2_SPIOL; Uncharacterized protein
STRING	XP_010695590.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]