PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_036090_aemp.t1
Common NameSOVF_036090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-X1
Protein Properties Length: 1162aa    MW: 126078 Da    PI: 8.2629
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_036090_aemp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.41.3e-07351369119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C+++CH GpC pC+
  Sp_036090_aemp.t1 351 CGRHRCNRKCHVGPCEPCQ 369
                        ******************7 PP
2zf-NF-X120.69.6e-07415432118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C ++CH+GpC++C
  Sp_036090_aemp.t1 415 CGNHYCAEICHPGPCGEC 432
                        ****************** PP
3zf-NF-X118.73.7e-06473492120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CGkH C+ +CH G+C pC++
  Sp_036090_aemp.t1 473 CGKHYCKDKCHSGDCSPCSE 492
                        ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.707181242IPR019787Zinc finger, PHD-finger
SuperFamilySSF578506.71E-8183243No hitNo description
PROSITE profilePS500899.391184240IPR001841Zinc finger, RING-type
PROSITE patternPS013590184239IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.11E-5273334No hitNo description
SMARTSM004380.29296314IPR000967Zinc finger, NF-X1-type
PfamPF014228.8298313IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-12341389No hitNo description
PfamPF014221.4E-5351368IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-4351370IPR000967Zinc finger, NF-X1-type
CDDcd060087.68E-9405452No hitNo description
PfamPF014229.8E-5415432IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4415434IPR000967Zinc finger, NF-X1-type
CDDcd060083.05E-13463511No hitNo description
PfamPF014225.1E-5473491IPR000967Zinc finger, NF-X1-type
SMARTSM004380.006473492IPR000967Zinc finger, NF-X1-type
PfamPF0142219531542IPR000967Zinc finger, NF-X1-type
CDDcd060085.79E-8561604No hitNo description
PfamPF014220.087571588IPR000967Zinc finger, NF-X1-type
SMARTSM004381571590IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-5618666No hitNo description
PfamPF014226.6628645IPR000967Zinc finger, NF-X1-type
SMARTSM004380.06628646IPR000967Zinc finger, NF-X1-type
PfamPF014220.029681696IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34681714IPR000967Zinc finger, NF-X1-type
PfamPF0142211716742IPR000967Zinc finger, NF-X1-type
SMARTSM004380.049723744IPR000967Zinc finger, NF-X1-type
PfamPF014241.8E-4856922IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.0E-49711013IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MSFQTQDVRR DRSRFPGQNG RQQAQAQAQQ WVARGPGILT SPPSNFNVYA GQNAGDGLER  60
PGQFDSRERQ GQFDSRERQG QFDSRERPGR WDNRERQGQT ESRGGRGFRG GGGGGGGGGR  120
SHMGRPQYLR RERNETREGV EEKGAAVNKD KGNQKKWGGK VVDSDLPQLV QEIQEKLSKG  180
TVECMICYDM VRRNAPVWSC SSCYSIFHLN CIKKWARAPT SADTSAEKIQ GFNWRCPGCQ  240
AVQLTTSKDI RYLCFCGKRH DPSSDLYLTP HSCGEPCGKP LEREIPRPGL SKEVMCPHLC  300
VLQCHPGPCP PCKAFAPPRP CPCGKKVITT RCSEQKSVHT CGQVCDKILE CGRHRCNRKC  360
HVGPCEPCQI PVDSSCFCKK RSEVVICGDM SLKGEISPDN GLFSCSSTCG SKLRCGNHYC  420
AEICHPGPCG ECDLLPSKVK TCYCGKTILK VPRRSCLDPI PTCSGTCNKR LPCGKHYCKD  480
KCHSGDCSPC SEFVTQKCRC GSTSRTVECY KTTLAGEKFV CDRQCGRKKN CGRHRCSERC  540
CPLSDSSNTI SISNDWNPHL CSMPCGKKLK CGQHSCEAFC HCGHCPPCLE TIFTDLTCAC  600
GRTSIPPPLP CGTPPPTCQY PCSVPQPCGH QSTHSCHFGD CPPCSIPIAK ECVGGHVVLR  660
NIPCGSKEIT CNKLCGKTRR CGLHACARSC HAAPCDQTGG SSSDSALIKG SCGQVCGAPR  720
RDCRHTCQAL CHPTALCPDS RCEFPVTITC SCGRITATVP CDAGGGSNSG FSAVNFLEAS  780
TLQKLPAPLQ PVEANEKRVP LGQRKLMCDD ECAKLERKRV LADAFDISQP SLDALHFGEN  840
SAVSQVLSEL LRRDPKWVLA VEERCKHLVL GKGKVNSTSN IKVHVFCTMQ KEKRDAIRLI  900
AERWKLTISA AGWEPKRFVV VHATPKSKAP ARIIGPKGLA AVNAHHPPGF DPLVDMDPRL  960
VVALLDLPSD ADISTLVLRF GGECELVWLN DKNALAVFSD PARAATAMRR LDNGSVYQGA  1020
AVVQHSGAGT AAVTAWGGAP AAAASSGPKG NPWKKTGLKD GNNWVEDSWG EEEEWSSGQA  1080
TSDVGPSSST KGREPSVTTT MNRWTVLNPE SSLGSTRAMD NAKRTAAAAE PTTSDREIKT  1140
APLNSVTDDS AEVVDDWEKA YE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111GGRGFRGGG
2108119RGGGGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844229.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0K9RRP50.0A0A0K9RRP5_SPIOL; Uncharacterized protein
STRINGXP_010693736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1