PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_035150_qgmo.t1
Common NameSOVF_035150
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 442aa    MW: 47069.3 Da    PI: 5.3187
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_035150_qgmo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.2e-17231283355
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                        ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l  ++++
  Sp_035150_qgmo.t1 231 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLLKRLTDISQK 283
                        689*****************************************988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-13228285No hitNo description
SMARTSM003381.9E-20229293IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.622231285IPR004827Basic-leucine zipper domain
PfamPF001704.1E-15232282IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.83E-12233282No hitNo description
CDDcd147029.03E-7234285No hitNo description
PROSITE patternPS000360236251IPR004827Basic-leucine zipper domain
PfamPF124985.4E-39300426IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDRVFSVGDI SDQFWSPPPP PPPPPAGDPH MNRSASEWAF ERFLQEASPL SDSSSSKSLV  60
ENDVVEIKDS PLTSAAVATT DVTSKYNNND FSSQSPVAVS SDGQSLGNST APLISQGSSV  120
PVDSEDYHAI LKSKLNLACA AVALTRAPFV INQNAAGAAE SVTQGSADSR PASIPPCKGS  180
QDKDAKPIGI PSLPSMPKKP VTQAKQTTSY DSDQSDDDDL EGETDNMDPA DVKRVRRMLS  240
NRESARRSRR RKQAHLTELE TQVSQLRGEN STLLKRLTDI SQKFNDAAVD NRVLKADVET  300
LRAKVKMAEE TVKRVTGMNP LLQAMSEISA MGMAPFGGSP CPSDSADAAV PVQDDPKQPH  360
YYQPVDNPLP ASHPRVDNGV ADISSIDDVL QNVATHVLGG SKIGRTASMQ RVASLEHLQK  420
RIRGGMDQGK PHGGGGGGGA EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245252RRSRRRKQ
2247252SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835227.10.0light-inducible protein CPRF2
SwissprotQ990901e-112CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0K9RTS90.0A0A0K9RTS9_SPIOL; Uncharacterized protein
STRINGXP_010674829.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.29e-69bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]