PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_035110_wgdk.t1
Common NameSOVF_035110
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 529aa    MW: 57701.1 Da    PI: 7.3314
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_035110_wgdk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.14.5e-361402521103
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 
                        a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ s+++++  ss+   +++ +g    
  Sp_035110_wgdk.t1 140 ATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDELDQLPAWSPTNMNVLSSNRRRGKNAAGdgvv 231
                        589**************************************************************888776663333333333333335566 PP

                TCP  89 .......kaaksaa.kskksqks 103
                               +  +sa+     ++++
  Sp_035110_wgdk.t1 232 emaeekaA--ASAEgMYGGEEQQ 252
                        66665321..2222122222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-33141253IPR005333Transcription factor, TCP
PROSITE profilePS5136934.272143201IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MRRREREEEQ APTPPFPPPP PTTTPNHHQL QQDPPPPFNH NHQFYVQQSQ SGNQFRELYS  60
ELEPRNLVSI SPPQQPIKKR SYISSSSPSV AASTQHVRQK SSMEDSSFEQ QQQPVSTRSA  120
LRKAGLGEIV EVQGGHIVRA TGRKDRHSKV CTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  180
DRPSKAVDWL INKAKTAIDE LDQLPAWSPT NMNVLSSNRR RGKNAAGDGV VEMAEEKAAA  240
SAEGMYGGEE QQQFYNNANS SSSSLLPPSL DSDAIADTIK SFFPITSSAS ASPMQYQDYS  300
QGGLLQRSGG GGGGGGDGSS SRQSQDLKLS LQSFQDPILM HQHSHHHGAT AVHHEQQHTL  360
FPGAVPIGFD NPNSSWSDSH HQPNPELGRL HRLMLGWNTQ QTDTDHHNVG NSSGSGGGGF  420
IFNQPPPLLQ PLFGGGQHSQ FLPQRGPLQS SNTHSIRAWI SDPSFSIASS NEHHNQHHQA  480
IAVHPQALSA LGFTSGGFSG FHIPARIQGE EEHGGDPNRP SSASSGSHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19148201154Putative transcription factor PCF6
5zkt_B1e-19148201154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851388.10.0transcription factor TCP4-like
RefseqXP_021851389.10.0transcription factor TCP4-like
RefseqXP_021851390.10.0transcription factor TCP4-like
RefseqXP_021851391.10.0transcription factor TCP4-like
TrEMBLA0A0K9RU330.0A0A0K9RU33_SPIOL; Uncharacterized protein
STRINGXP_004137216.11e-118(Cucumis sativus)
STRINGXP_004172687.11e-118(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-72TCP family protein