PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_032710_rhjo.t1
Common NameSOVF_032710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 673aa    MW: 74464.8 Da    PI: 5.9003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_032710_rhjo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10609664147
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        + rWT+eE+  l+++v+++  g      Wk I ++      kgRt+ ++k++w+++
  Sp_032710_rhjo.t1 609 KVRWTAEEEAMLKKGVEMYDIGngraiPWKNILEYGRpvfrKGRTAVDLKDKWRNL 664
                        679****************99999***********99*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.0E-7345404IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.1E-8353405IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002495.7E-5357402IPR001965Zinc finger, PHD-type
PROSITE patternPS013590358401IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.329604665IPR017877Myb-like domain
SuperFamilySSF466893.51E-11606666IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-10608666IPR009057Homeodomain-like
SMARTSM007174.0E-7608667IPR001005SANT/Myb domain
PfamPF002492.1E-6609664IPR001005SANT/Myb domain
CDDcd116605.64E-14610666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEEEVSDSTL PWSWVIEALA KSRLVDASLL YELVSKAPPL LEDSGRKARE AAALRCLEGL  60
CGSPNASGDY HLVPEWSKIW FDPAESCEAV LQRIWSETSG SKGALDELKC VIQSFVKHKK  120
ASSPRSTLGV LKDMLVNDTH PLFASLKEVS GVSVGDQCVL NIPFDGGDPT SPPLRSDEDD  180
HGDKTMLAEE NGCSPRSGIE DQLGQAYFTN GNSPTFRGGI SSCHTDNHVE KVEDASHDVD  240
NQCLPRKKLK LDKEYGMQSK HHHSVPVGSN LMCNSAEDGQ YHEVIKEYGI HDREAYGKDV  300
DEQSRTYVEN QDHQQISPNN DDHCREEIDL SKKNAFLSSQ LVCTRDSHGM TETELNRCAK  360
CNKGGQLLSC SASSCPLMFH KSCLGCSFSF DDQGNFCCPF CAYSYAASEY VRAKEKVSVA  420
RKELSLFIGG RTGDQPEYDG DTSSGDDVNQ AKQNNIDNTA EVKKGANVVS EVAKPHQRSL  480
KGKQLNISHS SAYLNNGFVM ATHQQLSLKD RQGAEIIIEL SRDPSLIWKQ GQDDHDCDGG  540
KFSGDNNELK NRGENTRCKI TELSENASSD SISDSDGSPQ DKRNHVTSSL PFPRPIRAIP  600
GTPPGRRNKV RWTAEEEAML KKGVEMYDIG NGRAIPWKNI LEYGRPVFRK GRTAVDLKDK  660
WRNLARDTNP KVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847278.10.0uncharacterized protein LOC110787001
TrEMBLA0A0K9RT570.0A0A0K9RT57_SPIOL; Uncharacterized protein
STRINGXP_010672769.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-06telomere repeat binding factor 3