PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_031310_cdtc.t1
Common NameSOVF_031310
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 387aa    MW: 42764.2 Da    PI: 4.5022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_031310_cdtc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19123172255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Sp_031310_cdtc.t1 123 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 172
                        69*******.**********954...4************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32123181IPR001471AP2/ERF domain
CDDcd000186.90E-32123181No hitNo description
PROSITE profilePS5103223.907123180IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-22123181IPR016177DNA-binding domain
SMARTSM003801.0E-37123186IPR001471AP2/ERF domain
PRINTSPR003671.2E-11124135IPR001471AP2/ERF domain
PfamPF008474.6E-12124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAVISDY YIPTGRSHRL TADYLWPDLK GAAVAAAKKG TTGYSKPLRS GIANVDDDDA  60
VADQAFEADF LEFKDESDDE VSVLPEFKPF SFALPKPKSP TGLKPVEFES QAEKSAKRKR  120
KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEARRI RGDKAKVNFP  180
EESPAPSATP RRAVKVRSQK PATSQNINQN FNVMNNPQNE YYKSFAVVEE KPQVKQFQYS  240
DPMPVVGEVA AFQPFTTTPS EGADLYFNSE EGSNSFDCSD FAWGENGPKT PEISSFFSSA  300
LSSDDDGNAT KKMKVTPGDA LPVEEHSGKS LSEELSDADF ESQLNFLDTP YLDENWAIDA  360
FLGGDASNEG VNPMDLWSFD DFPGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201221891381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0270481e-129KJ027048.1 UNVERIFIED: Atriplex canescens isolate AC601-2 Ac protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847489.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021847490.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0K9RT780.0A0A0K9RT78_SPIOL; Uncharacterized protein
STRINGXP_010685231.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.35e-56related to AP2 2