PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030330_jiiy.t1
Common NameSOVF_030330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 643aa    MW: 73357.5 Da    PI: 6.8305
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030330_jiiy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1964.4e-3062153291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        fYn+YA+++GFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+ + +eHnHel+p
  Sp_030330_jiiy.t1  62 FYNSYARRIGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRMITRVGCKAILSVKIQDSGKWVVIGFCKEHNHELVP 153
                        9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2862153IPR004330FAR1 DNA binding domain
PfamPF044345.1E-12417463IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.053429465IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9440467IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MENQVLNFDI ELGPGTTISD DAIEIDLPET PFPLFSAIEG ELVELEPYDG MEFESEEAAK  60
AFYNSYARRI GFSTRVSSSR RSRKDGAIIQ RSFVCAKEGF RNLNEKRTKD REIKRPRMIT  120
RVGCKAILSV KIQDSGKWVV IGFCKEHNHE LVPPDQVHCL RSHRQISGPA KTLIDTLQAA  180
GLGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNKQRSM EGDFQLLIEY LKQMEMKSSE  240
FYFAEKLSHV LLEAPGFEGD FHKCVNLPES VDEFECCWLS VLDRYNLRDN EWIQSIYSAR  300
RQWVPVYLRD AFFAEMSITQ RSDSMNSYFD GYVNASTNLS QFFKLYEKAL ESRNEKEVKA  360
DFETMSSPPV LKTPSPMEKQ ASGLYTTKIF MRFQEELVGT LTFTATKADD DGEVLTYQVA  420
KYGDDRKVFR VRFNVLEMIA TCSCQMFEFS GLLCRHVLAV FRVTNILTLP SLYILKRWTK  480
TAKSSVILDN PHGSTVTSYL ESHTVRYNSL RHAAFKFVDE GASSSETYDV AMAALQEAAE  540
KVAQALKNVQ RSSLANGLIK DSTRERGLRD KVSHANDVSL SEQVSEDFMD QKIRELSKEL  600
ESASRKCEVY RANLLSVLKD IEDHKQQLAV KVHNVKISLK DSI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842483.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0K9RV790.0A0A0K9RV79_SPIOL; Uncharacterized protein
STRINGXP_010690587.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]