PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_028150_psos.t1
Common NameSOVF_028150
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 302aa    MW: 33507.4 Da    PI: 7.8776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_028150_psos.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l+++ ++ G+g +W + +++ g++R++k+c++rw++yl
  Sp_028150_psos.t1 14 RGPWSPEEDATLKNYLHKNGTGgNWISLPQRAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding48.12.6e-1569111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g++T+eEd  ++ ++ ++G++ W+ Ia+ ++ gRt++++k++w++
  Sp_028150_psos.t1  69 GAFTEEEDNTIISLFYKMGSR-WSVIAANLP-GRTDNDVKNHWNT 111
                        89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.54962IPR017930Myb domain
SuperFamilySSF466894.3E-2711109IPR009057Homeodomain-like
SMARTSM007177.9E-111364IPR001005SANT/Myb domain
PfamPF002495.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-231569IPR009057Homeodomain-like
CDDcd001673.78E-81662No hitNo description
PROSITE profilePS5129424.11163117IPR017930Myb domain
SMARTSM007171.7E-1467115IPR001005SANT/Myb domain
PfamPF002492.6E-1469111IPR001005SANT/Myb domain
CDDcd001671.51E-1170113No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYLH KNGTGGNWIS LPQRAGLKRC GKSCRLRWLN  60
YLRPDIKHGA FTEEEDNTII SLFYKMGSRW SVIAANLPGR TDNDVKNHWN TKLKKKLFGA  120
NNNNNNNINK FNVPKIEAPF IHNPNIYQPS SSSSTPNHSF NHDHNHNLNQ NLYNQFYVPI  180
PSFSTLLAQC STPTSPMSLL PNYTTLSNMG HPYNPVPTPT YSSPDARYML HTPVPESVGP  240
PEEASSVSGS SSAVYGSSLE DDPFFAELGF GLMQEVMMNS PNCGYGDQED IKPQGLGQSV  300
AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849572.10.0transcription factor RAX2-like
TrEMBLA0A0K9RU570.0A0A0K9RU57_SPIOL; Uncharacterized protein
STRINGXP_010667955.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-66MYB family protein