PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_028020_doqm.t1
Common NameSOVF_028020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 357aa    MW: 40895.7 Da    PI: 8.1822
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_028020_doqm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.4e-53131431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL+   k+ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Sp_028020_doqm.t1  13 VPPGFRFHPTDEELLYYYLKKKVSYEAIDL-DVIREVDLNKLEPWDLKDrcKIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRD 103
                        69****************************.9***************952444443456********************************* PP

                NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++   + + +g++ktLvfy+grap+g+ktdW+mheyrl
  Sp_028020_doqm.t1 104 KAIYLGnNARRIGMRKTLVFYTGRAPHGHKTDWIMHEYRL 143
                        ****9756677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-599164IPR003441NAC domain
PROSITE profilePS5100558.34213164IPR003441NAC domain
PfamPF023654.7E-2814143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMPGNGGSGQ ISVPPGFRFH PTDEELLYYY LKKKVSYEAI DLDVIREVDL NKLEPWDLKD  60
RCKIGSGPQN EWYFFSHKDK KYPTGTRTNR ATAAGFWKAT GRDKAIYLGN NARRIGMRKT  120
LVFYTGRAPH GHKTDWIMHE YRLNDDDPQL QQEDGWVVCR VFKKKNHTRG LQSEVLHEDD  180
YENTSAPNNH HSSNQMMKLS TNPNTSPTLY PQRQHGYNIQ PLMLPNNYYN TDYTFDGAMH  240
LPQLASPPDP ISVPGGSTLF TTMDNILRLS TPAAGGLLNT QQLLSNNGGE WGFLDKLLAN  300
YQSLDQHQHQ HQRQHEQQQP LQNKIVAGTP NHHHHHDHSL GMTSTNALQL HHQHKFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-501016914170NO APICAL MERISTEM PROTEIN
1ut4_B5e-501016914170NO APICAL MERISTEM PROTEIN
1ut7_A5e-501016914170NO APICAL MERISTEM PROTEIN
1ut7_B5e-501016914170NO APICAL MERISTEM PROTEIN
4dul_A5e-501016914170NAC domain-containing protein 19
4dul_B5e-501016914170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844800.10.0NAC domain-containing protein 76-like
SwissprotQ9MA171e-105SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0K9RU340.0A0A0K9RU34_SPIOL; Uncharacterized protein
STRINGXP_010680384.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-88NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]