PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_027110_ffix.t1
Common NameSOVF_027110
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 672aa    MW: 75219.6 Da    PI: 6.6777
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_027110_ffix.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-084054421954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gLt  qV++WF N R +
  Sp_027110_ffix.t1 405 FEHflHPYPSDVDKHILARQTGLTRGQVSNWFINARVR 442
                        554459******************************88 PP
2BELL100.51.3e-32265333472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        elqk+k+kLl +le++d+ Yk+y+eq++ v+ sFeavag g+a++Y +lA++a+SrhFrcL+d i  qi
  Sp_027110_ffix.t1 265 ELQKRKTKLLGMLEKLDRGYKHYCEQMKGVVCSFEAVAGPGAANVYSALASRAMSRHFRCLRDTILTQI 333
                        89****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.8E-40169331IPR006563POX domain
PfamPF075263.9E-43178329IPR006563POX domain
PROSITE profilePS5007111.855383446IPR001356Homeobox domain
SMARTSM003892.2E-8386450IPR001356Homeobox domain
CDDcd000869.28E-11386447No hitNo description
SuperFamilySSF466899.84E-17387453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27389452IPR009057Homeodomain-like
PfamPF059207.3E-17403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAANHHQQLL EEKSSSSTSF GYSDVHHNHH HHLGVSHLQN FDSNPEIYNL ASGIEMIGFQ  60
PKPHNLMVAV QQEQQHQQEM GFMDDSSSLR PCVFPCEGNE RPSQGLSLSL SSSNPSTISL  120
QSFELRHNLH LNHPQRFDLS SPEKSHSFHH LQQQQQHQPS SGSGSGSGSG SMSIQFEMMR  180
NSKYMGPTQE LLNEFCNLGT KQQDDDDDLQ RKKQQSSEKK KKNKEQWEFE EEGRDDDGDR  240
NSNQNNNAST SSNVNSSLYG VSLLELQKRK TKLLGMLEKL DRGYKHYCEQ MKGVVCSFEA  300
VAGPGAANVY SALASRAMSR HFRCLRDTIL TQIKDTKKAM GEKDNANNAT ILGTTRGETP  360
RLRLLDQNLR QQRAYQQMTL METHPWRPQR GLPERSVSVL RAWLFEHFLH PYPSDVDKHI  420
LARQTGLTRG QVSNWFINAR VRLWKPMVEQ MYVEETKEEQ DNNMGSSSDG TEQPPATDHL  480
TSLIQDQKPD PDQLIRIDPD SLSSIVNNTT TATATATATS TSSRNLYLQQ SGQFIGNRVE  540
GFGSVDHLDF PSSSSYNQQH HAAAYGSTNQ NDNSTLHQGF GGGNGGGNNV SLTLGLQQHG  600
GNGNGVSLAF SPASQPTASS LFYPRDHHHH HHHQIDDCEP VHQYSLLDGD HQGQNNLPYR  660
NLMGAQVLHD FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16392450563Homeobox protein Meis2
3k2a_B5e-16392450563Homeobox protein Meis2
4xrm_A6e-16392450563Homeobox protein Meis2
4xrm_B6e-16392450563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845072.10.0homeobox protein BEL1 homolog
TrEMBLA0A0K9RUP40.0A0A0K9RUP4_SPIOL; Uncharacterized protein
STRINGXP_010676435.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.18e-94TALE family protein