PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_026180_qgyj.t1 | ||||||||
Common Name | SOVF_026180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | FAR1 | ||||||||
Protein Properties | Length: 230aa MW: 26271.8 Da PI: 6.2571 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.2 | 2e-21 | 87 | 188 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fY+++A+ vGFs+rk +++ + ++ + ++t+vCs g +++ k+k +e++ r+ + trt+C+a+l+vk++++g++ev + Sp_026180_qgyj.t1 87 FYQKHASAVGFSIRKGNTRFKVGTRIVLEKTYVCSAAGVTNNGKNKktkvqtvvpvvpkKERKPRQVSITRTQCRACLRVKMNSEGRYEVVN 178 9*************************************99998888899********888888889999*********************** PP FAR1 81 leleHnHela 90 + HnH+l+ Sp_026180_qgyj.t1 179 HVIMHNHDLT 188 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-18 | 87 | 188 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MENLIRSVIQ STQTIQVPVE PDIQDATMED VLYNCIENNA LAQEREEEEA MEAEEQDIIS 60 DSEEPDQDIV GTQMGYTAET VEELLGFYQK HASAVGFSIR KGNTRFKVGT RIVLEKTYVC 120 SAAGVTNNGK NKKTKVQTVV PVVPKKERKP RQVSITRTQC RACLRVKMNS EGRYEVVNHV 180 IMHNHDLTRS QWHYLHRSER QITEEKREAI ETMQKSGNSY ILIVKLLCSV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021840791.1 | 1e-131 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
TrEMBL | A0A0K9RUT0 | 1e-170 | A0A0K9RUT0_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-08 | FAR1-related sequence 5 |